Xiphophorus hellerii (green swordtail): 116730066
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Entry
116730066 CDS
T07363
Name
(RefSeq) PDZ and LIM domain protein 5-like isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116730066
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
xhe04990
]
116730066
Domain-containing proteins not elsewhere classified [BR:
xhe04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
116730066
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GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
Motif
Other DBs
NCBI-GeneID:
116730066
NCBI-ProteinID:
XP_032434934
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Position
12:15037545..15090707
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AA seq
567 aa
AA seq
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MSGNYSVTLLGPAPWGFRLQGGKDFNMPLTISRLTDGGKAAKGGVAVGDTVLSIDGVSTE
GMNHLEAQNKIKNCTGNLSLTLQKSSVSKPPPVAPKDNRTDLIKPVAITHPSVSQHPQSQ
GSAPYKKAPRPYGGCSSDGVYSPSQSPFTTFIPSPSSAFTPASSHIGPPPSSLLPPLISY
PSSASSSSSPPVLVAPQPSVYNTPINLYSTENACEVAMGQRRGLLESQGGTLPHFNGKHI
VDTDIHFYHVPTHADASRKRIMEDTEDWRPRTGTTQSRSFRILAQITGTENVQNEEADAS
KKTNEGEEEAQLNSHESAVVKTMMKGTASNHGQGVQSGLITPSFGMKGNGSASVLRGPVP
VRPVPQPHPKDEDTLVQMAEHIPAGMRTPMCAHCNMVIRGPFLVAMGKSWHKEEFNCAHC
RTSLADIGFVEEKGSVYCEHCYEEFFAPTCSRCQAKILGEVINALKQTWHVYCFMCAACQ
QPIRNNTFHLEDGEPYCEQDFYSLFGTGCHGCEFPIEAGDKFLEALGYNWHDTCFVCVVC
CASLEGQTFFSKKDKPLCKKHAHTVKI
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggaactacagcgtcactctgttggggccggccccttggggtttcaggctacaa
ggagggaaggactttaacatgcccctcaccatctccaggctgacggatggtgggaaagca
gctaaaggtggtgttgcagttggagacacggttctctccatcgatggtgtttccacagag
ggcatgaaccaccttgaggcccaaaacaaaatcaagaactgcaccgggaaccttagtctc
actctgcagaaatccagtgtttctaagcctcctccagtggcaccaaaggacaaccgaaca
gacctcataaaaccagtagccatcacccatccctctgtttcacaacatccccagtctcag
ggctctgccccttacaaaaaggcccccagaccttatgggggttgcagctctgatggtgta
tactctccttcacagtcacctttcaccaccttcatcccttccccatcctctgccttcact
cctgcttcatcccacattggtcctcccccttcctctcttcttcctcctttgatctcttac
ccatcctctgcatcctcttcctcctcccctcctgtcctggttgcgcctcagccatcagtg
tataacacaccgatcaacctctactcaactgaaaatgcgtgtgaggtggccatggggcaa
aggcggggcctgttggagagtcagggaggaaccttaccacattttaatgggaaacatatt
gtggacacagacatccatttttaccatgtgcctactcacgctgatgccagtagaaagcgc
ataatggaggacacagaggactggcgtccacgcacgggcaccacccagtcccgatctttc
aggattctggctcagatcacaggcacggagaacgttcaaaatgaagaagctgatgcatca
aagaagacaaatgagggtgaagaggaggcacagcttaactcccatgaatctgctgtcgtc
aaaactatgatgaaaggaactgcttccaaccatggccaaggagtacagagtggtttgatc
actccatcttttggaatgaagggtaatgggagtgccagtgtcctcaggggtcctgttcca
gtccgaccagtgcctcaaccccaccccaaagatgaggacactctggtccagatggcagaa
cacattcctgctgggatgcgaacccccatgtgtgcccactgcaacatggtgatcagagga
ccatttttggttgcaatgggaaaatcatggcacaaggaggaatttaactgtgcccactgc
cgaacatctctggcagacataggctttgtggaagaaaaaggctctgtgtattgtgaacac
tgctatgaagagttctttgcaccaacctgcagccgctgccaggccaagatattgggggag
gtaattaatgccctgaaacaaacatggcatgtctattgcttcatgtgtgctgcctgtcag
cagccaatcaggaacaacacctttcacctggaggatggagaaccttattgtgagcaagac
ttttacagtttgtttgggactggctgccatggctgtgagttccctattgaggctggagac
aaatttctggaggcactcggttacaactggcacgacacctgctttgtttgtgttgtatgt
tgtgcctctctggagggtcagacctttttctccaaaaaggacaaacctctttgcaagaaa
catgctcacacagtgaagatatga
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