Xiphophorus hellerii (green swordtail): 116730359
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Entry
116730359 CDS
T07363
Symbol
vcan
Name
(RefSeq) LOW QUALITY PROTEIN: versican core protein
KO
K06793
versican core protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04514
Cell adhesion molecules
xhe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
116730359 (vcan)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116730359 (vcan)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xhe00535
]
116730359 (vcan)
00536 Glycosaminoglycan binding proteins [BR:
xhe00536
]
116730359 (vcan)
04091 Lectins [BR:
xhe04091
]
116730359 (vcan)
Proteoglycans [BR:
xhe00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
116730359 (vcan)
Glycosaminoglycan binding proteins [BR:
xhe00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
116730359 (vcan)
Lectins [BR:
xhe04091
]
C-Type lectins
Lecticans
116730359 (vcan)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
EGF
V-set
EGF_TEN
Sushi
hEGF
EGF_2
Ig_3
I-set
EGF_CA
Motif
Other DBs
NCBI-GeneID:
116730359
NCBI-ProteinID:
XP_032435403
LinkDB
All DBs
Position
12:18757792..18789611
Genome browser
AA seq
3230 aa
AA seq
DB search
MILNIKHILWLYYLCGAAYTTTSNTLSIIQPISGSLSGKVNLPCFFSTIPTSAPVIGTNR
TANYGKDYLRIKWTKIKGQEKSTVLVMQNGVIKMNPIYRNRVSVPSHPEDVGDASLTMVK
LRASDAGTYSCEATYGIEDTHDIVNLDVSGVVFHYRASPSRYTLSYEKAVQTCKDIGASI
ATYSQLKAAYEDGFDQCDAGWIADQTVRYPITRPRDGCLGNLKMTPGVRTYGVRNPSETY
DVYCYVDKLDGEVFYAPAAGKLTFLEAAEECKKHKAVLASTGQLHAAWRMGLDRCDYGWL
SDGSVRHPVVHPRIPCGGGLMGVRTLYRYRNQTCFPEPSMKFGAYCFRGGRDTINQTFLV
DVSVQEVITTTTTTRSTTVSTTSFDTTAEAEKSSDYDPTYVTSMFSVSMSPPQPTPPDQD
AQLITTVAPTIIEDPDDNDSISDIDINYSNSFGTVGPVPSHGEEITEIHMTKETTGSTAS
FEDPDSHSVIEISTIKPDVLLLDDSLNTAGRFAEGKTEKTIVTHRMITDISSKITDAPTE
STEMTRKGAFISSESTPFITAPGFQLTTPGDYEDGTIIDNFLQATPPFQPFPQIIDQTAM
ETSTPTTSGTTSRYNTVPEDEISTTEITETLDIERQTIQKTQEADSLATPGDPDVASRFP
VESRVFTEEVALSTTEHTLSESSSRRTEHTAETPTEVDTLGSSGAERFTFSSTTSAVTST
LKITPSVVTEAQIQNISESRTSGENITKSTETPITKTTSGSSAFNILSVSTSRKAETSDT
SKTDVSSASALQSTEEPTSMSSETYQTLATVKLQETSAVPEESSKSPITREDRTSKPTSE
MSSRDIASSTGSSLFSTEKTTNLLPKDDDSDQTGQTTTPSLSTVTGRTESSSAASPVDTD
YTRGQTIDMSTPVSTVAGLSSSDIVNETTRSPEAMTIQISTEPETSGEGSAAFADKSVVT
IATAFPTSAVSDGKPMSPSTLSSIIPSVSSSTTLHDEYEEMSTRFTTVESIDVLSESSIQ
PDTASKLIVTDPESAGQTHSNVTDESMKTTAVYTTIGTKSASVSESYTSETSDVSKTAVT
PAVLLRSTAKPTLESTETEQTFTTSHSQAKSETSFDTSSSAMTDGRSTNPYTSGYPEEMS
SKHMASPTGSSLISPETTTAEQIDSFSTEQRTLPSVSSFTEKPEKSVGPTTEDMDGSGTL
STDLFTSSITVIGGSSSLYSIDTTTVTTSPESESASVRTEQGTSGENITKSTETPITKTT
SGSSAFNILSVSTSRKAETSDTSKTDVSSASALQSTEEPTSMSSETYQTLATVKLQETSA
VPEESSKSPITREDRTSKPTSEMSSRDIASSTGSSLFSTEKTTNLLPKDDDSDQTGQTTT
PSLSTVTGRTESSSAASPVDTDYTRGQTIDMSTPVSTVAGLSSSDIVNETTRSPEAMTIQ
ISTEPETSGEGSAAFADKSVVTIATAFPTSAVSDGKPMSPSTLSSIIPSVSSSTTLHDEY
EEMSTRFTTVESIDVLSESSIQPDTASKLIVTDPESAGQTHSNVTDESMKTTAVYTTIGT
KSASVSESYTSETSDVSKTAVTPAVLLRSTAKPTLESTETEQTFTTSHSQAKSETSFDTS
SSAMTDGRSTNPYTSGYPEEMSSKHMASPTGSSLISPETTTAEQIDSFSTEQRTLPSVSS
FTEKPEKSVGPTTEDMDGSGTLSTDLFTSSITVIGGSSSLYSIDTTTVTTSPESESASVR
TEQGTSGENITKSTETPITKTTSGSSAFNILSVSTSRKAETSDTSKTDVSSASALQSTEE
PTSMSSETYQTLATVKLQETSAVPEESSKSPITREDRTSKPTSEMSSRDIASSTGSSLFS
TEKTTNLLPKDDDSVQTGQTTTPSLSTVTGRTESSSAASPVDTDYTRGQTIDMSTPVSTV
AGLSSSDIVNETTRSPEAMTIQISTEPETSGEGSAAFADKSVVTIATAFPTSAVSDGKPM
SPSTLSSIIPSVSSSTTLHDEYEEMSTRFTTVESIDVLSESSIQPDTASKLIVTDPESAG
QTHSNVTDESMKTTAVYTTIGTKSASVSESYTSETSDVSKTAVTPADLLRSTAKPTLEST
ETEQTFITSHSQAKSETSFETSSSAITDRRSTNPYTSGYPEEMSSKHMASPTGSSLISPE
TTTAEQIDSFSTEQRTLPFISSFEVTTRLSTNEPNFSFTSEEVISPETDDFNKVEYSAFE
GSADIDDTMLEMQTEAQQPFVEISSLAISAASLSDAKHTELTTKSHNDYFVATDEAETDE
TESQSLTSLSGTQPAKKIFSSTLAPQMTNRETNFADPSIGNGFFDANPSESTFQSVSNAT
FRDMSDETETLVSIKTTFGEQISKKGVEHFSNTENPLSFEPIKHPDTRTKSPDKDGVAIE
EEATQSSHKTEYVINDHTVNSSSSDTNIKYILSKSTPSPGIRYHSNKEQQVVIVMPSHDK
TETGQTKQMPTMILHASEPSSSASILFTEDTKDEDKLFSGVTYNLRQESSTSKVITKDNI
FINFDTTSAVSSSPFYPTIRTEEVGVDSAITITQEMNLREEPEGSGAVNAPFFTPSPVTT
DSVSVTDLSRSFLLSSTQATTESTYSSSKESLGGHTAQTTTFSAGNDQNRSMTSSTKTKV
SSVTGVSSKLVSSNPSLKEISASASSDYIIKFHSTVSPVVTPQKSFEQVRSEITNTYHPQ
PENFSEELSQATIYPMSTTHEKLLVEESTSYHPGNYSVSQVDYGLASHVTALPKQISDAN
VGKQTSPQSSFYPDNDHHAPVSGAGNQKLLHSVSQYNETSESNTSEVDISTLSKASTSES
SQTVFKATATTISSIHGELTTSTQSPNQVELGTSLATQPSSFSEEEEKHDRKTSTFPFLN
ERDPAIEEGTTPSVQIRLDVGHTVVGETVDISGMYSCKENICLNGGSCFKSGSIYSCSCS
PGYTGHQCETDIDECQSNPCRNGGTCVDGLASFTCVCLPSYSGLYCEKDTEICDYGWHKF
QGHCYKFFPQRKGWDSAERECRIQGAHLTSILSHEEQQFVNRLGQDYQWVGLNDKMFDND
FRWTDGSPVQYENWRPNQPDSFFSSGEDCVVMIWHEGGQWNDVPCNYHLTFTCKKGTVAC
SQPPVVENARTFGRKRERYEINTLVRYQCRNGFIQRHVPTIRCRGDGRWDTPKITCISPS
SYQRSFMRRHQPHALYSINNFKKWQDETLRHHHQRNRGRRDRTIQKRTKQ
NT seq
9693 nt
NT seq
+upstream
nt +downstream
nt
atgattctaaatattaagcatatcctgtggttatattatctgtgtggtgctgcatataca
acaacatccaacacattatcaataatccaaccaatctctggatccctctcagggaaagta
aatcttccctgcttcttctccacaatcccaacatcagcgccagtcataggtacaaataga
acagccaattatggcaaagattacttacgaatcaaatggaccaaaataaaaggacaggaa
aagtctacagtgttggtgatgcaaaatggggtcatcaagatgaaccccatctacaggaac
cgtgtgtcagtgcccagtcaccctgaggatgtcggtgacgcctccttgactatggtcaag
ctgcgagctagtgatgctgggacttacagttgtgaagccacatacggcattgaagatacg
catgatattgttaaccttgatgtcagtggtgttgtttttcactatcgagcaagccccagc
aggtacaccttaagttatgagaaagctgtccaaacttgcaaagatattggagcaagcata
gctacctattcccaactgaaagcagcttatgaagatggatttgaccagtgtgatgctggc
tggattgctgaccagacagtgagatacccaattaccagaccaagagacggctgccttgga
aaccttaagatgacacctggtgttaggacatacggagttagaaacccttcagagacctac
gatgtatactgttacgtcgataaacttgacggtgaagtcttttatgctcctgcggcgggt
aagctaacttttttagaggccgctgaggagtgcaaaaaacacaaagctgtcttggcgtcc
actggccaactccacgctgcttggagaatgggactggacagatgtgactatggctggctc
tctgacgggagtgtacgacaccctgttgtgcatcctaggattccatgtggcggaggccta
atgggtgtcaggacactgtatcgctacagaaatcagacctgctttccagaaccttccatg
aagtttggagcttactgctttagaggagggagagacacaatcaaccagactttccttgtg
gatgtatctgtacaagaagtcattactaccaccaccaccaccagatccaccactgtttcc
accacatcattcgacacaacagcagaggcagagaagtcttcagactatgatcccacatat
gttacatcaatgttctctgtcagtatgtctcctcctcagcccactcccccagaccaagat
gctcaattaatcacaacagttgcaccaacaattatagaggatcctgatgataacgatagt
ataagcgacatagacataaattactctaacagctttggtactgttggacctgttccttcc
catggtgaagagatcactgaaattcacatgacgaaagagaccactggttccacagcatcc
tttgaagatccagattcccactcggtgattgagatcagcacaatcaaacctgatgtactt
ctactagatgactctttaaatacagcaggcaggtttgcagaggggaagacagagaaaact
attgtgactcataggatgatcacagatatttcctctaaaatcacagatgctcctacagaa
tctactgaaatgaccaggaaaggagcatttatttcctctgaatcaacaccattcatcaca
gctcctggtttccagttaacaacaccaggagattatgaagatgggactataattgataat
tttctccaggctactccaccattccagccattcccacagatcatagatcaaactgccatg
gaaacatcaaccccaactacaagtggcactacctctaggtataacactgtgccagaagat
gagataagcaccacagaaataacagagacccttgacattgaaaggcaaacaatacaaaaa
acacaggaagcagattctcttgctacacctggtgatccagatgtagcttccaggttcccg
gttgagagccgagtgtttactgaagaagtggcattgtcaacaactgaacacaccctcagt
gagtccagcagtcggagaacagaacatactgcagaaactccgacagaggttgacactttg
ggaagcagtggggcagagagatttacattctcttctacgacatcagctgtaaccagcacg
ctcaaaatcacaccttcagtggtcacggaggcacagattcagaatatttcagaaagtaga
acttctggtgaaaacatcactaagtctactgagacacccatcactaaaaccacgtctggc
tcttctgctttcaatattctgtccgtctcgacatcaagaaaagccgaaacaagtgacact
tcaaaaacagatgtttcttcagcttcagcgctccagagcacagaggaaccaacatcaatg
tcatctgaaacatatcagactcttgctacagtgaagttgcaggaaacgtcagcagttcca
gaggaaagttcaaaatctccaattacaagagaagataggacaagtaaaccaacaagtgaa
atgtctagcagagacattgcatcttctactggctcatcattgttcagcactgagaagaca
acaaatcttctacctaaggatgacgacagtgatcaaacaggtcagacaacgacaccttca
ctttccacagtaacaggcagaacagaaagttcttctgccgcttctccagtagatacagac
tatactagaggccaaaccattgacatgtccacaccagtctcgactgttgcagggttatcg
tcatctgacatcgtcaacgagacaacacgatcgcctgaagctatgacgattcaaataagc
acagaacccgaaacctctggagaaggctctgctgcttttgctgacaagtcagttgtgacc
attgccaccgcattcccaacatctgctgtctctgatggtaaacccatgagcccatcaacg
ctttcttcgattattccatctgtctcatcatccacaactctgcatgatgagtatgaagaa
atgagtacaaggtttacaactgtcgagtccattgatgtactcagtgaatcaagtattcaa
cctgacacagcttcaaagctcattgtcacagatccagaaagtgctggacaaacacattct
aatgttactgatgagtcaatgaagacaacagcagtttatacaacaataggcacaaagtca
gcttcagtctcagaatcatacacatctgaaacaagtgatgtgtcaaaaactgctgttacg
ccagccgtcttactccgtagcacagcaaaaccaacattggaatctactgaaacagaacaa
acttttaccacatcccattctcaagcaaaatctgaaacttcatttgacacgtcaagctca
gccatgactgatggaaggagcacaaatccatatactagtggataccctgaagaaatgtcc
agcaaacacatggcatctccaacaggttcctcgttaatcagtccagaaaccacaacagca
gaacaaattgatagcttttcaacagaacaaagaactctcccctcagtttcatcctttact
gaaaagccagagaaaagtgttggtcctactacagaagatatggacggttcaggaactctg
agtacagacttgttcacatcatctataaccgttattggtggatcttccagtctctacagt
attgacacaacaacagtaacaacatctcctgaatcagagtctgcctctgtgagaacagaa
caaggtacttctggtgaaaacatcactaagtctactgagacacccatcactaaaaccacg
tctggctcttctgctttcaatattctgtccgtctcgacatcaagaaaagccgaaacaagt
gacacttcaaaaacagatgtttcttcagcttcagcgctccagagcacagaggaaccaaca
tcaatgtcatctgaaacatatcagactcttgctacagtgaagttgcaggaaacgtcagca
gttccagaggaaagttcaaaatctccaattacaagagaagataggacaagtaaaccaaca
agtgaaatgtctagcagagacattgcatcttctactggctcatcattgttcagcactgag
aagacaacaaatcttctacctaaggatgacgacagtgatcaaacaggtcagacaacgaca
ccttcactttccacagtaacaggcagaacagaaagttcttctgccgcttctccagtagat
acagactatactagaggccaaaccattgacatgtccacaccagtctcgactgttgcaggg
ttatcgtcatctgatatcgtcaacgagacaacacgatcgcctgaagctatgacgattcaa
ataagcacagaacccgaaacctctggagaaggctctgctgcttttgctgacaagtcagtt
gtgaccattgccaccgcattcccaacatctgctgtctctgatggtaaacccatgagccca
tcaacgctttcttcgattattccatctgtctcatcatccacaactctgcatgatgagtat
gaagaaatgagtacaaggtttacaactgtcgagtccattgatgtactcagtgaatcaagt
attcaacctgacacagcttcaaagctcattgtcacagatccagaaagtgctggacaaaca
cattctaatgttactgatgagtcaatgaagacaacagcagtttatacaacaataggcaca
aagtcagcttcagtctcagaatcatacacatctgaaacaagtgatgtgtcaaaaactgct
gttacgccagccgtcttactccgtagcacagcaaaaccaacattggaatctactgaaaca
gaacaaacttttaccacatcccattctcaagcaaaatctgaaacttcatttgacacgtca
agctcagccatgactgatggaaggagcacaaatccatatactagtggataccctgaagaa
atgtccagcaaacacatggcatctccaacaggttcctcgttaatcagtccagagaccaca
acagcagaacaaattgatagcttttcaacagaacaaagaactctcccctcagtttcatcc
tttactgaaaagccagagaaaagtgttggtcctactacagaagatatggacggttcagga
actctgagtacagacttgttcacatcatctataaccgttattggtggatcttccagtctc
tacagtattgacacaacaacagtaacaacatctcctgaatcagagtctgcctctgtgaga
acagaacaaggtacttctggtgaaaacatcactaagtctactgagacacccatcactaaa
accacgtctggctcttctgctttcaatattctgtccgtctcgacatcaagaaaagccgaa
acaagtgacacttcaaaaacagatgtttcttcagcttcagcgctccagagcacagaggaa
ccaacatcaatgtcatctgaaacatatcagactcttgctacagtgaagttgcaggaaacg
tcagcagttccagaggaaagttcaaaatctccaattacaagagaagataggacaagtaaa
ccaacaagtgaaatgtctagcagagacattgcatcttctactggctcatcattgttcagc
actgagaagacaacaaatcttctacctaaggatgacgacagtgttcaaacaggtcagaca
acgacaccttcactttccacagtaacaggcagaacagaaagttcttctgccgcttctcca
gtagatacagactatactagaggccaaaccattgacatgtccacaccagtctcgactgtt
gcagggttatcgtcatctgacatcgtcaacgagacaacacgatcgcctgaagctatgacg
attcaaataagcacagaacccgaaacctctggagaaggctctgctgcttttgctgacaag
tcagttgtgaccattgccaccgcattcccaacatctgctgtctctgatggtaaacccatg
agcccatcaacgctttcttcgattattccatctgtctcatcatccacaactctgcatgat
gagtatgaagaaatgagtacaaggtttacaactgtcgagtccattgatgtactcagtgaa
tcaagtattcaacctgacacagcttcaaagctcattgtcacagatccagaaagtgctgga
caaacacattctaatgttactgatgagtcaatgaagacaacagcagtttatacaacaata
ggcacaaagtcagcttcagtctcagaatcatacacatctgaaacaagtgatgtgtcaaaa
actgctgttacgccagccgacttactccgtagcacagcaaaaccaacattggaatctact
gaaacagaacaaacttttatcacatcccattctcaagcaaaatctgaaacttcatttgaa
acatcaagttctgccattacagatagaaggagcacaaatccatatactagtggataccct
gaagaaatgtccagcaaacacatggcatctccaacaggttcctcgttaatcagtccagaa
accacaacagcagaacaaattgatagcttttcaacagaacaaagaactctcccatttatt
tcatcatttgaagtcactacaagattgtccactaatgaacctaacttttcttttaccagt
gaagaggtgatatcaccagaaactgatgacttcaataaggtggagtattcagccttcgaa
ggatctgcagacatagatgacacaatgcttgaaatgcaaacagaagctcagcaacccttt
gtcgaaatatcttccctagcaatctctgcagcaagcttatcagatgcaaagcataccgaa
ctcaccacaaaatctcacaatgattattttgttgcaacagatgaggctgaaacagatgag
actgaaagtcaatctttaacaagtctttctggtacacaacctgccaaaaaaattttctcc
tccactctagccccacagatgacaaacagagagactaattttgctgatccgagcattgga
aatggtttttttgatgccaaccctagtgagtcaacatttcaatcagtgtctaatgccacg
tttagagacatgtcagatgaaacagaaacccttgtttcaattaaaacaacatttggtgag
cagatttccaaaaaaggggttgaacatttctcaaatacagaaaaccccctcagttttgaa
ccaataaaacatccagatacaagaacaaaaagtccagataaagatggagtggcaatagaa
gaggaagcaacacaatcgtctcataaaacagagtatgttataaatgatcacacagttaat
agttctagcagtgacactaatataaaatatatcctatcaaaatccacaccatctcctggt
attagatatcatagtaacaaagaacaacaggttgtgattgttatgccaagtcacgacaaa
actgagaccggacaaactaaacaaatgcctactatgatcttgcatgcatctgaaccatca
agcagtgcatccattctattcacagaggatacaaaagatgaagataaacttttttctgga
gtcacatataatttgaggcaagaaagttccacctccaaagtcatcacaaaagataatata
ttcattaattttgatactacatctgcagtttcctcctctccattttacccaactatccgg
acagaggaagttggagttgattcagcaattacaataacacaagagatgaacttaagagaa
gaaccggaaggctcaggggctgtcaatgctcctttttttactccttcaccagtaactaca
gattcagtttcagtcactgacctgtcaaggtcttttttgttatcatcaactcaagctact
actgagtcaacatattcaagttctaaagaaagccttggtggacatacagcccaaactact
actttttctgctggaaatgatcaaaacagatcaatgacttcatcaacaaaaactaaagta
tcttcagtaactggagtttcaagtaaacttgtttcctctaacccttctctcaaagaaatt
tcagcttcagcttcatctgactatataattaaattccactcaactgtttcacctgtagta
acacctcagaagtcatttgaacaagtgagatcagagatcacaaacacataccacccacaa
ccagagaatttctctgaagaattatcacaagccacaatttaccctatgtccacaactcat
gaaaaacttctggttgaagaatcaaccagttatcatcctggtaattattctgtgagtcag
gttgattatggtttggcaagtcatgtgacagctctcccaaaacaaatttctgatgcaaac
gttggaaaacaaacatccccacagagtagcttttaccctgacaatgatcatcatgcccca
gtcagtggtgcaggaaaccaaaaacttcttcactctgtttctcagtacaatgaaacctca
gaatcaaacactagtgaagtggatatttccacactgtccaaagcatctacaagtgagtct
tcccagactgtattcaaggcaactgctacaacaatatcaagtatccatggagaattaaca
acatcaacacagtcaccaaaccaggtagaattaggtacatctttagccacacaaccttca
tccttttctgaggaagaagaaaaacacgacaggaaaacatcaacatttccattccttaat
gaaagagatccagcaatagaagaaggaacaaccccctctgtccaaataagactggatgtg
ggccacacagttgttggcgagacagtggacatttctggaatgtattcatgtaaggagaac
atttgtctgaatggaggatcttgcttcaagagtggcagcatctattcatgtagctgttct
ccgggttacactggtcatcagtgtgaaacggacattgatgagtgccagtcaaatccatgc
cgtaatggaggcacatgtgttgatgggctggcttcctttacatgcgtgtgtctcccaagc
tactctgggctttactgtgagaaagatactgaaatatgtgactatggttggcacaagttt
caaggccattgctacaaattcttcccccagaggaaaggttgggactctgcagagcgagag
tgccgcattcagggagctcatctcaccagcatcctttcccatgaagaacaacagtttgtc
aaccgtcttggacaggattaccagtgggttggcctgaatgataagatgtttgacaatgac
ttccgctggactgatggcagccctgtgcaatatgaaaactggaggcccaaccagcctgac
agcttcttttcatctggagaagactgtgtggtgatgatttggcatgagggtggccagtgg
aacgatgtcccttgcaactatcatctaaccttcacatgcaagaaaggcacagtggcctgc
agccagccccctgtggttgaaaatgcacgtacctttggtagaaagcgtgagaggtatgaa
atcaacacactggtgaggtaccagtgtcgaaatgggttcattcagagacatgttccaacc
atccgctgccgtggcgatggacggtgggatacacctaaaatcacctgtataagcccgtcg
agctatcagaggtccttcatgaggagacatcaaccccatgcgctatacagtatcaataat
ttcaaaaaatggcaggatgagaccttgcgccaccaccatcagcgcaacaggggaaggaga
gacagaacaatacaaaagaggacaaagcaatga
DBGET
integrated database retrieval system
