Xiphophorus hellerii (green swordtail): 116730405
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Entry
116730405 CDS
T07363
Name
(RefSeq) protein transport protein Sec24C-like isoform X1
KO
K14007
protein transport protein SEC24
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
116730405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116730405
Membrane trafficking [BR:
xhe04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
116730405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_helical
Sec23_BS
zf-Sec23_Sec24
Gelsolin
Motif
Other DBs
NCBI-GeneID:
116730405
NCBI-ProteinID:
XP_032435490
LinkDB
All DBs
Position
12:complement(10034177..10045037)
Genome browser
AA seq
1008 aa
AA seq
DB search
MMDAPSRNQSHPPCPPWVVQNGWSSDAPAGPLCNPLSDLQQLSLGCEPSQNLSYNHLQAS
GVYSKSDVAAFSTRSNSHPSMQYVCKVDQSIPDGLSPTIQERNKPPCSLPYNEAAQPMQH
YSPPNAYQAVDPSSYSQHTYRSLLNQPPAQHPLPVSFSCVEPQLNHNQHLASDGGNSGSF
VGFNDMLTSPSAPIQQQPLWSFAAFSKGSINDFVPTASPLDHNLTPQSPNSESRYGLNPE
LLPSVVKVMAEDRAEWDGKVFISEHFSRLPPLATTSCVIEDRGNVSPLAIRSITYCVPCD
GQTALLSRLPLGALVTPFFNQNECLKPIPLCEHTDCVVGCRWCGASMCPAMGWQDCGQRF
YCPFCGKLNEVPWQQYQPTKGAKGVRVDKDKRPELSMGSYETLNSEKGEAAALLLAIDVS
ASALRGGHLEFVAQQIHTLLTSLVRGGVCREAGDSSSDLRVGLMTYDSRIHLYDLSPDLS
RPHMLVIAETEDMQLPVREGLLVSLKDCIESIDSVLQLIPQFGAECSDSSGLSIELPVKA
GLAVLQGLKCPGKLLIFHTAALIETGHTNSSSGFFGTNKPKSIFQPSEKAISLAKECIIQ
GCGVHMFVLSQQDVGGAWPGHIPFLTGGALHTYSYLQGELDRERFSTDLKRIVETETAYK
AELRIFVSKDLRVSGCYGLFVPGSNPGHIAMATLNCRTTLAVELTHSKALDETRGAAVQV
VLSYTSQTGERRTRVQTLTLRCSRHLQDTFRNYQAETLLTFYCKKMYCAVLERPLQELRK
ELQTDVTEALASYRKHCCSSSVSAGQLVLPQFLRALPVYVNGLRKSEVLLPGLRSSVHQR
LQQRCRVLGLDTRSTVRHFYPLLLPLLPSVDSSSPPDPEGALRCTSSNLDSSGLYLVHAP
FTVLLWVGTQVPAGTLVELFNASCFSSLPSGETNLPALENCLSIRVRSLISSLNSDVPYA
RKLVVVKQGDTCEEALQRHLVEDKSPNGGASYADFLYHLHVNSVRLLL
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgatggacgccccgtcccgtaatcagagccaccctccctgtccgccgtgggtggtccag
aacggctggtcctctgatgcgcctgcaggacctctctgcaatcctctctccgacctccag
caactcagcctgggctgtgaacccagccaaaacctgagctacaaccacctgcaggcatct
ggcgtttactctaagagtgatgttgctgccttttctactaggagcaactctcatcccagc
atgcagtatgtttgtaaagttgatcagagcattcctgatggtttatctcctactatccaa
gaaaggaacaaaccaccatgctctcttccatataatgaagcggcgcagccaatgcaacat
tattcccctcctaacgcttaccaagcagtagatccctcatcatattctcaacatacatat
cgaagtcttctgaatcagccaccagctcaacatcctcttcctgttagcttttcgtgtgtt
gaacctcagttaaaccataatcaacatcttgcatccgacgggggaaactctggatctttt
gttggatttaatgacatgctgacctcacccagcgctcccatccagcagcagcctctgtgg
agctttgcagcgttctctaaagggagcataaatgactttgtgcccactgcatctccactg
gatcataatttgacaccacagtctcccaactctgagtctcgttatggcctgaatcctgaa
ctcttaccaagcgttgtaaaggtgatggcagaggacagagcggagtgggacggaaaagtt
ttcatctcggagcatttttctcgcctgcctcctctggcgaccacttcctgtgtcatagag
gacagaggtaacgtaagccctttggccatccgctctattacttactgcgtcccctgtgac
ggtcagacggcgctgctcagccgactgccactaggggcgcttgttactcccttcttcaat
caaaatgaatgcctgaagccgatccctctatgcgaacatacggattgtgtcgtgggctgt
cgttggtgcggcgcctccatgtgcccagcgatgggctggcaggactgtgggcagaggttt
tactgccccttctgtgggaaactcaatgaagtgccgtggcagcagtaccagcccaccaaa
ggagcgaagggggtccgggttgacaaagacaagaggcccgaactcagcatggggtcgtat
gaaacactgaactcagaaaagggtgaagctgctgctcttcttctagccatagatgtttct
gcctctgcactgagaggaggacacttagaatttgtcgctcagcaaatacacacattgctc
acttcactggtcagggggggggtttgtagagaggcaggagactcttcgtcagatctccgt
gtgggtttgatgacgtatgacagcaggatccacctgtacgacctcagtcctgacctttcc
cgtcctcacatgctggtcatcgctgagacggaagacatgcagcttcctgtgagggagggg
cttctggtgtccctcaaagactgcatagaaagtatagacagtgtgttgcagctcattcct
cagtttggggctgagtgcagtgactccagtggactttccattgagcttcctgttaaagca
ggcctggctgtattgcagggcctgaagtgtccagggaagctgcttatcttccacacagcc
gccctgattgagacgggacacacaaactcttcctcagggttctttgggaccaacaaacca
aagtccatcttccagccatcagaaaaagccatctcattggctaaagagtgcatcatccag
ggatgcggcgtccacatgtttgttctgtcccagcaggatgtgggcggggcttggccgggc
cacattccatttctaactggtggagctctgcacacctacagctacctccagggtgaactg
gacagagagcgtttcagcacggatctgaagcggattgttgagacggaaacggcctacaag
gctgagctccggatattcgtcagcaaagatttgcgtgtgtctggttgctatgggctgttt
gtccctggttcgaaccctggacacatcgccatggcaacactcaattgcaggacaactctg
gctgtggagctgacccacagcaaagctttggatgagacgagaggggcagccgttcaggtt
gtcctgtcttacacttcccagacgggagagagaaggaccagagttcagactttgacactg
agatgctcacgccacctacaggacactttcaggaactaccaggctgaaacccttctcact
ttctactgcaagaagatgtactgtgcagtgttagagcgccctctgcaggagctgaggaag
gaactgcagacagatgtaacagaagctctggcgtcttaccgcaaacactgctgctcgtct
tcagtgtctgctggccagctggtgcttcctcagttcctgcgagctcttccagtttacgtc
aacggcctgaggaagagtgaggttctgctgccgggtctgaggagctccgtccaccagcgg
ctgcagcagcgctgtcgggtgctgggcctcgacacccgcagcaccgtccgacacttctac
cccctgctgctgcctctgctgccttcagttgacagctccagtcctccagacccagagggg
gcgctacggtgcacgagttccaacctggactccagtggtctgtacctggttcacgccccc
ttcactgtgctgctctgggttggcactcaggtccctgcggggacgcttgttgagctcttc
aacgccagctgcttctcttcgctgccttcaggcgagaccaaccttccagctctggaaaac
tgtctgtccatcagagtccggtcactcatcagctcgctcaactccgacgttccctatgcc
cgcaagcttgtggtggtgaaacaaggcgacacctgcgaggaggcgctgcagcgccacctg
gtggaagacaaaagtcccaacggaggagcgtcatatgcagacttcctgtatcatctccac
gtcaactctgtccgtctcctgctgtga
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