Xiphophorus hellerii (green swordtail): 116730433
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Entry
116730433 CDS
T07363
Symbol
smarcb1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03082
ATP-dependent chromatin remodeling
xhe03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116730433 (smarcb1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
116730433 (smarcb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xhe01009
]
116730433 (smarcb1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116730433 (smarcb1)
03036 Chromosome and associated proteins [BR:
xhe03036
]
116730433 (smarcb1)
Protein phosphatases and associated proteins [BR:
xhe01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116730433 (smarcb1)
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116730433 (smarcb1)
SWI/SNF complex
116730433 (smarcb1)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116730433 (smarcb1)
PBAF complex
116730433 (smarcb1)
SWI/SNF complex
116730433 (smarcb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
116730433
NCBI-ProteinID:
XP_032435566
LinkDB
All DBs
Position
12:complement(10163693..10172720)
Genome browser
AA seq
370 aa
AA seq
DB search
MALSKTFGQKPVKFQLEEDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRKLATVEERKKI
VESSHDHGYTQLATSVTLLKASEVEEILEGNDEKYKAVSISTEPPTYLREQKAKRNNQWV
PTLPNSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIHENATQPEVLVPIRLD
MEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
LLEDQTDQRVIIKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGEADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTW
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttagcaaaacgtttgggcaaaaaccggtgaaatttcagctcgaagaggatgga
gaattttacatgatcggttctgaggtggggaactacctgcgcatgttcagaggctcccta
tataagcgatacccgtcgttatggagaaaactggcaacagtggaagaacggaagaaaatt
gtagagtcttcacacgatcacggctacactcagctggccaccagcgttacgctcctgaag
gcctcggaggtcgaggagatcctcgaagggaacgatgaaaaatacaaagctgtgtctatc
agcactgagccgcccacctacctcagggaacagaaggcaaagaggaacaaccagtgggtt
cccacgttgcccaacagttcccaccacctggacgccgttccctgctccaccaccatcaac
cgcagccggctgggccgggacaagaagaggaccttccccctgtgcttcgacgaccacgac
ccggcagtgatccatgaaaacgccacacagcctgaggttcttgttccgatccgtctcgac
atggagatcgagggtcagaaactgagagacgctttcacctggaacatgaacgaaaagctc
atgacacctgagatgtttgcggagatcttgtgtgacgacctggatctgaaccccctggcc
ttcgtccccgccatcgcctcagccatccggcagcagatcgagtcgtacccgacagacagc
ctcctggaggaccagacggaccaaagggtgatcatcaagctgaacatccacgtggggaac
atttcgctggtggaccagtttgagtgggacatgtcggagagagaaaactctccggagaag
tttgccctgaagctctgctcggagctcggcctgggcggagagttcgtcaccaccatcgcc
tacagcatccgaggtcagctgagctggcaccagaggacatacgccttcagtgagaacccg
cttcctacggtggagatcgccatcagaaacacgggcgaggcagaccagtggtgccccctg
ctggagaccctgacagacgcagagatggagaagaagatcagagaccaggacagaaacacg
agacgaatgaggcgtctggcgaacacgtggtag
DBGET
integrated database retrieval system
