Xiphophorus hellerii (green swordtail): 116730645
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Entry
116730645 CDS
T07363
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xhe00535
]
116730645
Proteoglycans [BR:
xhe00535
]
Extracellular matrix (ECM) proteoglycans
Others
116730645
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
VWA_3
Fn3_nematode
I-set
Pga1
Motif
Other DBs
NCBI-GeneID:
116730645
NCBI-ProteinID:
XP_032435886
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All DBs
Position
13:5112238..5260821
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AA seq
1870 aa
AA seq
DB search
MQFSVRLSFFLLGFVFIAVLPHTAKGQVSSPRRFRVKVLGQDKLEVSWKEPKGDFEGYKV
IYITRPGGQQKVLELAKQETKLIIKDYNPSKDYNFKISAVNGGKESKPLLGKHEAQQSGP
ETAQTQGTKKSDVTRENNEISEAEDGFMCKTPAIADIVILVDGSWSIGRINFRLVRAFLE
NLVNAFSVEFDKTRIGLAQYSGDPRIEWHLNAHTTKEAVIEAVKNLPYKGGNTLTGLALT
FILENSFKVESGSRPGVPKIGILITDGKSQDDVIPPAQSLKDAGIELFAIGVKNADENEL
KAIASPPEETHVYNVADFSVMSDIVEGLTKTVCDRVEQLDKKIKGGGEPAPPVTSIAPPR
NLVTSEITARSFRVTWTHAPGLVEKYRVVYYPASGGQPEEKVVVGTENSVELTYLNSLTE
YQVAVFAVYRSSASEALRGSATTLALPTVNNLELFDITHSTMRVRWKIAAGASGYMILYA
PLTEQEAADEKEVKVGDSVNEVELEGLTPATEYTVTVYAMYGEEASDPMTSQQTTLPLIP
ASNLRFQDVDHSSVRITWDSPSRLVRGYRIMYVKTSGVQTTEVDLGAVTSYLLKNLTSLT
EYTVGVFAVYKEGEAPAVTESFTTKMVPDPMDLKSSDISSDGFRVSWQHAASDVVLYRLT
LTPTDGGESKEVLVNGNINTYVTKGLEPASEYEVLLAAIYANQEESDEVVLIETTAKRTT
TVATTTTTTLTPRYAVKNLKIDEETTFSMRVSWQAVDSRNVRHYQLTYISARGDRAQEMR
TVPSGQTSLVLQPLLSDTEYKVTVVPVYNEGDGPVSSQMGRTLPLSAPRNLRVSEEWYSR
FRVSWDVPPSPTMGYRVVYQPLSAPGQALETFVGEDVNTMLILNLLSGTEYSVKVIASYT
TGSSEALTGKAKTLYLGVTSLSTYQVRMSGVCAQWVPHRHASTYRLVIQSVTGSQKQETK
LGGGASRHCFSSLKPNTEYKISIYSQLQDGTEGPAVTANVKTLPIPTLAPAKPPTTSPPP
TIPPAKEVCKAAKADLVFLVDGSWSIGDDNFLKIIRFLYSTVGALDRIGPDGTQVAIAQF
SDDARTEFKLNSYGDKERLLDAINKISYKGGNTKTGRAIQHVKENIFTAEGGARRGIPNV
LVVLTDGRSQDDVNKVSKEMQMSGYIVFAIGFADADYGELVSIASKPSDRHVFFVDDLDA
FQRIEEKLVTFVCEAATATCPSIPMSGSTTPGFRMMELFGLVENKYNSISGVSMVPGTFN
AFPCFHLHSNALMAQPTRFIHPEGLPSDYTITLLFRVLPDTPEEPFAIWEILNKNNDPLT
GVILDNGGKTLTFFNNDFRGDFQTVTFEDPEIKKLFFGSFHKLHIAISKTSAKVFIDCKM
VAEKFINAAGNITTDGVEVLGRMVRSRENKDNSAPFQLQNFDIICSTSWANRDKCCELPG
LRKEVDCPALPKACTCTQDSKGPAGPPGVPGGPGIRGARGDRGEPGPVGPAGPVGDTGVP
GPQGPPGPQGPSGRSIIGPPGSAGERGQKGEAGQQGQQGIPGRPGPVGREGPPGPRGLPG
KDGPQGRQGPPGTMGTPGAPGSPGNTGAQGKQGTLGPPGPPGTKGEKGERGDLQSTASVQ
AIARQVCEQLIQSHMSRYNTILNQAPSPPVSIRTVPGPPGEPGREGAPGPQGEQGPPGRP
GFPGQNGQNGNPGERGQPGEKGEKGSAGVGVQGPRGPPGPPGPQGLGRPGSQGPTGRPGN
PGTSGRPGVPGPVGPPGPPGYCDQNSCLGYNVGEVEEITDVRGIPPVQLPSSVFQNYGEV
EEDDPYRYYQPNYPAPQPVSPDDPALALDDVELRSPGVYRSKRSTKAEEVQAGTKRRIKR
GVKNLPKLTN
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atgcagttctcagtcagactgagcttcttcctgctgggctttgttttcatcgcagtgttg
cctcacacagcaaaaggccaagtttcatcaccacggagatttcgtgtaaaagtcctggga
caggacaagcttgaggtatcatggaaggagccgaaaggagattttgaaggatacaaggtt
atttacatcacacgtccaggtggacaacagaaggtgcttgaactagcaaagcaggaaaca
aagctgatcattaaagattataacccctcaaaagattacaactttaagatcagtgctgtg
aatggcgggaaggagagcaaacctcttctaggaaaacatgaagctcagcaatcaggcccc
gaaacagctcaaacccaggggactaaaaagagtgatgtcacacgagaaaacaacgagatc
tcggaagctgaagatggattcatgtgcaagactcctgccatagccgacattgtgattctg
gtggatggctcttggagtattggtcggattaactttaggctggttcgagccttcctagaa
aaccttgtcaatgccttttctgtagaatttgacaaaacaagaattggacttgctcaatac
agtggagaccccaggattgagtggcatctgaacgctcacactaccaaagaggctgtgata
gaggctgtgaaaaacttgccctataaaggaggaaacacactgacaggtctggctctcacc
tttatactggaaaacagcttcaaagtagaatctgggtcccggcctggtgttccaaaaata
ggaatcctcatcactgatgggaagtcccaagacgatgtgattcctcctgcccaaagcctg
aaggatgctgggatagaactgtttgctattggtgtgaaaaacgcagatgaaaacgagctg
aaggccattgcgtctcctcctgaggagactcacgtctataatgtggcagacttcagtgtg
atgagtgacatcgtggaaggtctcaccaagacagtctgtgaccgtgtggaacagcttgac
aaaaaaataaaaggaggaggagagccagctccacccgtcacctctattgcaccccctcgt
aatctcgtgacatcagagataacagctcgtagttttcgggttacatggacgcacgcgccg
ggcctagtggagaaatatcgagtggtgtactatccagccagtggaggacaaccagaagaa
aaagtggtcgtggggacggagaacagcgtggagctgacctatctgaactccctcactgag
taccaggtggctgtttttgccgtctaccgaagctctgccagcgaggccctgagaggaagt
gccaccacattggcactgcccacagtgaacaacctagagttattcgatatcactcacagc
accatgagggtccgctggaagatcgccgcgggggcttcggggtacatgatcctgtatgcc
ccactgactgagcaagaagctgcagatgagaaggaggtgaaagtgggtgattctgtaaat
gaggtggagctggaaggattaactccagccactgaatacactgtaacagtttatgccatg
tatggagaggaggctagtgatcccatgaccagccagcagaccacattaccactcatccca
gcaagtaacctacgtttccaagatgtggaccacagctcagttcgcataacttgggattcc
ccttccaggttggtgcgaggctaccgtatcatgtacgtcaagaccagcggagtccaaact
actgaggtggaccttggtgctgtgacgagttatttgctcaaaaacctgacctccctgacg
gagtacaccgtcggggtctttgctgtctacaaagaaggagaagctccagcagtgaccgaa
agcttcaccacaaagatggttccagacccgatggatctgaaaagcagtgatatctcctca
gatggtttcagggtgtcatggcaacacgccgcctctgatgtggtgctgtatcgactcacc
ttgacacccaccgatgggggagagagcaaggaggttctggtgaatggaaacattaacacc
tatgtgactaaaggactagaacccgcctccgaatatgaagtcctcctggctgctatctac
gcaaaccaggaggagagtgatgaggtggtgctaatagaaaccactgctaagaggacaact
acagttgctacaacaaccacaacgacattaacacctcgttatgctgtgaagaacctgaag
atcgatgaagaaaccacatttagcatgcgggtgtcgtggcaggctgtggactccagaaat
gtccgtcattatcaactgacctacatcagtgccaggggagacagagcacaggagatgagg
acggtgccctcaggtcaaaccagcctggttctgcagcctctcctttcagacacagagtac
aaagtcaccgtggttcctgtttacaatgagggagatggcccggtatcctcacaaatgggt
cggacacttcctctttcagctcctaggaacctgcgtgtgtcagaagaatggtacagccgc
ttcagggtcagctgggacgttcctccttcgcccactatgggctacagagttgtctaccag
cctctttctgcccctggacaggcattagagacttttgttggagaggatgtgaacaccatg
ctgatcctcaacctcttgagtgggacagagtacagtgtcaaggtcatcgcgtcctacacc
acaggatccagcgaggctctaacgggaaaggccaagactttgtatcttggagtaaccagt
ttgagcacatatcaagtgaggatgtctggtgtttgtgctcagtgggtgcctcaccggcat
gccagtacctacagactggttattcaatctgtgactggtagtcagaagcaggagaccaag
ctcggtggaggtgccagcagacactgtttcagcagcctgaagcccaatacagagtataag
atcagcatatactctcagctacaggatgggactgaaggaccagctgtcactgcaaatgtg
aagacattaccaattccaacactagcacctgccaagcccccgaccaccagtccaccaccc
acaatccctcctgctaaagaagtttgtaaggcagccaaagcagacctggtctttttagtt
gatggttcctggagtatcggtgacgacaacttcctgaagattatccgtttcctgtacagc
accgtcggagctctggatcggataggcccagacggcacacaggtggccatcgcccagttc
agtgacgacgctcggactgagttcaagctgaactcctacggtgacaaagagcgtctgctt
gatgccatcaacaagatctcctacaagggaggaaacactaaaacaggtcgagccatccag
catgtgaaggaaaacatctttaccgctgagggaggagccaggagaggaatccctaacgtc
cttgtagttctgactgatggccgatcccaggatgacgtcaataaagtttccaaagagatg
cagatgtcaggttacattgtgtttgctatcggcttcgctgatgccgactatggagagttg
gtgagcatcgccagtaaaccgagcgacaggcacgtcttcttcgtggacgacctggacgcc
tttcagaggatcgaagagaagctggtgacctttgtgtgtgaagccgctactgcgacttgt
ccatcaataccaatgagtggcagcacaaccccaggattccgtatgatggagctgtttgga
cttgttgaaaataagtacaacagcatctctggtgtttccatggtacctggcaccttcaat
gcctttccctgtttccacctgcacagcaacgctctgatggcccagccaaccaggtttatc
catcctgaggggcttccctctgactacaccatcaccctgctgttcagagtgctgcccgac
acgccggaggagccctttgctatctgggagatcctcaataagaacaacgatccacttact
ggagtcatcctggacaatggaggaaaaactctgacattcttcaacaacgacttcagggga
gattttcagactgtcacatttgaagatccagaaattaaaaaactcttcttcggaagcttt
cacaagctgcacattgcaatcagcaagacgagtgccaaagtgttcatcgactgcaaaatg
gtggcagagaagttcatcaacgcagcaggaaacatcaccacagatggagtggaagttctg
ggcaggatggttcgctcccgagagaacaaggacaactctgcaccgttccagctccagaac
tttgacattatttgcagcacatcctgggccaacagagacaagtgctgtgaactgcctggt
ctgaggaaggaggtagactgtccagccttacccaaagcctgcacctgcacacaggacagc
aaaggtccagctggtcctcccggagtgcctggcggtcctggaatcagaggggccagaggt
gatcgtggagagcccggtcctgtgggacccgcaggtcctgttggagatacaggtgtaccc
ggacctcaaggaccccctggaccacagggaccaagtggccgctccatcattggaccccct
ggttctgcaggagagagggggcagaaaggtgaagctggccaacagggacaacagggtata
cctggaagacctggccctgtgggaagagaaggacctccaggacccaggggacttccaggc
aaagacggcccacagggcagacagggacccccgggaactatggggactccaggagctcct
gggtctcctggaaataccggcgcccaaggaaaacagggaaccctgggaccaccgggtcca
ccaggaacaaagggagagaaaggtgaacggggtgaccttcaatcaacggcatcagttcag
gccattgccagacaagtctgtgagcagctgatccaaagtcacatgtcacgctacaacact
atcttgaaccaagcgcccagtccaccagtgtccatccgcacagtgcctggacctccagga
gaacctggtcgggaaggtgccccagggccccagggagaacagggaccaccaggaaggcca
ggctttcctggccagaatggtcaaaatggaaatcctggagaacgaggtcaaccaggagaa
aagggggagaagggatctgcaggcgttggtgtccagggccccagaggacctccaggaccg
cctggtccccaaggactgggcagacctggcagccagggtccaacaggtcgccctggaaat
cctggaacttctggtcggcccggagttcccggtccagtcggccctccaggaccgccggga
tactgtgaccagaactcttgtttgggctacaatgttggagaagttgaagagatcactgac
gtccgcggtatccctccagtccaacttccgtccagcgtcttccaaaactacggagaggta
gaagaggatgacccataccgctactaccagcccaactacccagctcctcaacccgtctcg
cctgatgaccccgcgctggcgctggacgatgtcgagctgaggtcccccggtgtgtaccgc
agcaaacggagcacaaaggcggaagaggtgcaagccgggacaaagaggagaataaagaga
ggagtgaagaatcttcctaaactaactaactga
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