Xiphophorus hellerii (green swordtail): 116730737
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Entry
116730737 CDS
T07363
Symbol
col16a1
Name
(RefSeq) collagen alpha-1(XVI) chain isoform X1
KO
K24339
collagen type XVI alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116730737
NCBI-ProteinID:
XP_032436066
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All DBs
Position
13:21317625..21416570
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AA seq
1562 aa
AA seq
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MWLLCSSMTLLVVGFGSCDTLTSQEGVQCPSLQVAEWKFPRTARQNITGFNLVRRFSLLK
DTDVRKLRNPRGSVILRLGKTSLLRPSNQVFPHGLPDEFTLIFTLALKKSALRDTIYLFQ
ISDQQGYPQLSVDFSTADGTLTLRARGADPEAELVSCVFNGEGVEALTDLQFHKLALSVQ
RDAASLHVDCNSIETKPLEPRGVLQTDGHTLLGVRASDAGPVQMDVQQVMLYCDPLLAIE
ESCCEILGARCPTDTAKSRRAAENDLDENMFSQDIFASKDLAEKCAGCLLLSKEENVANL
GGKDGRGDGCSGPCTDGSRGQKGEKGEPGTASNRGQAAGYKGEKGQKGEIGPQGLTGTPG
KNGQERSICVVGPKGQKGTPGSVGPEGLAGEPGKPGLPGLPGFGKPGPPGPPGDGRGGKG
DPGPKGEGGLPGDPGPRGPGGPKGEKGDPCEVCPVLQPGPKGEPGLPGIGERGLPGVEGA
NGKAGQKGEHGSDGTKGEKGEPCSVCPTLGELPPKLIPRGQTQTLQQKGEKGEPGIGQKG
EQGEPGNVGLPGLKGEKGNAGNAGAAGKPGKPGPRGAAGKDGQRGAQGEDGKPGVGTAGP
KGEKGDFGPGPPGPPGPPGLGAEGKQGPSGQSGAKGEKGESGEQGDKGLIGVPGVPGLPG
DPGQDGLTGLKGEKGDSCTSCLSAGPAVGDGVAVPGPKGEKGNPGSPGAGKPGKTGNRGL
PGVQGPSGPKGSKGDAGAAGVGLPGPQGIEGPRGLPGLLGPPGVTGLPGSVGPAGEKGSR
GDAGLPGPQGPPGFGVAGPPGKDGASGPRGLPGADGAPGFHGAKGDKGERGECNCNPPGP
TIVGGPGAPGTPTNTWQPGPQGPPGPPGPPGPPGPQGVIGIQGPQGIPGNDGIPGLPGKS
SYTGPQMPQDTNIDVGDEDCGEGCSQGLPGVPGMAGAKGEKGDQGKPGATVMDSCDRCLE
RLQRTQATEATGDRSCTGTPGIPGVPGATGIKGDTGSPGERGSPGPPGIMGPPGFPGPQG
PSGLSGQQGERGSAGLPGMKGEQGPPGTPGYPGTMGPPGLPGLKGERGSPGGAGQKGESG
PPGSPGYQGQAGSPGIKGDTGPAGPVGSKGDQGFQGQPGFPGSPGPPGPAGKPGREGISG
LKGEKGNDGSTGSQGPTGPPGSPGSPGLMGPPGIEGMDGKDGKPGLRGEAGPPGPAGPRG
IPGFKGKTGHVGFPGQKGDVGPAGPQGPPGRPGHDGDQGTPGLQGRPGPPGQIGPTGPAG
PPGPPGPSGVGIQGDKGPSGERGLPGLVGPTGPPGHPGLMGEPGSDGAAGKDGTPGLQGD
SGQPGQKGEPGAPGQRGSPGERGRPGPPGGGGYLGKDAQPMMGPVGPRGERGSPGSDGLP
GPPGAPGSPGNDAFVNYDDIKNFIRQQVVKIFDERMGYYMSRMQMPVEMVASPGRPGPPG
KDGVPGTPGPQGPPGVPGQFGRQGRPGGQGLPGPRGPSGVKGDKGVGEMGDVGPPGAPGI
PGPPGYGKMGPPGPVGQQGVPGIPGSPGQPGTKGKEGRCNPADCMSHQVDYSPKGPPVKG
PW
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgtggcttctgtgctcctccatgactctgttggtcgtcggtttcggatcatgcgacact
ctgacgtcacaagaaggtgtacaatgcccgtccttacaagtggctgagtggaagtttcct
cggacggccaggcaaaacattactggttttaatttggtgaggcgattctccttgctcaaa
gacacagatgtcagaaagctccgcaaccctcgaggttctgtcatcctacgccttggcaag
acgtcactcttgcgcccaagcaatcaagtgttccctcacggcttacctgacgagttcacg
ttgatcttcaccctggctttgaaaaagtctgcactgagggacaccatctacctctttcag
atatcggatcagcaggggtatccacagctttcagtggacttcagcactgccgacggcacc
ctgaccctgcgagccagaggtgccgaccccgaggccgagctggtgagctgcgtctttaac
ggcgaaggcgtcgaagccctgacggacctccagtttcacaagctggccctcagcgtgcaa
cgcgacgccgcctcccttcacgttgactgcaactccatcgagacaaagcccctcgagccc
cgaggcgtcctgcagaccgacggacacacactgctgggtgttcgggcctcagatgccgga
ccggtgcagatggatgttcagcaggtgatgctgtattgtgacccattgcttgcaattgaa
gagtcctgctgcgagatcctcggcgctcggtgccctactgatactgcaaagagccgtcga
gcagctgaaaacgacctggatgaaaacatgtttagccaggatatttttgcatccaaggat
cttgcagaaaaatgtgctggttgtttactcctgagtaaggaggaaaatgttgcaaacctt
ggaggaaaagatggccgaggcgatggttgctcaggtccatgcacagatggatccaggggc
cagaagggcgagaaaggcgagccgggaacggcttccaaccggggtcaggcagctgggtac
aagggagaaaaaggtcagaaaggggagattggtccgcaaggcctgacaggaacaccaggg
aagaatggtcaagaacggtccatctgcgtcgtcggccccaagggacagaagggcactccg
ggttcggtgggtccagaggggttagctggggagccagggaagcccggacttccgggtctg
ccaggatttggaaaaccgggtccaccgggccctcctggcgatggtagaggtgggaaggga
gacccaggaccgaaaggagaaggcggattgccaggagacccgggaccaagaggcccagga
ggtccaaaaggagagaagggtgacccatgcgaagtgtgcccggtgttgcagcccggccct
aaaggagagcccggattgccggggatcggagagagaggactccctggtgtcgaaggagca
aatggcaaagcgggacagaagggagaacacggatcagatggcaccaaaggagaaaaggga
gaaccgtgttccgtgtgccccaccctcggagaactcccacctaagctcatccctcgtggc
caaactcaaactctgcagcagaagggagagaagggggaacccgggattggacagaaagga
gagcaaggggagccaggaaacgttggtttacctggccttaaaggagagaagggtaatgcc
ggcaacgcgggagctgcaggaaagccggggaaacctggaccgaggggggctgcggggaag
gacggacagagaggtgcacagggtgaagacgggaagcccggtgtgggaaccgctggccca
aagggtgagaagggcgactttggacctggccctccaggtccccctggacctccaggactt
ggagctgaaggcaaacagggaccatcaggccagtctggtgctaagggagaaaagggcgag
agtggagaacaaggagacaaaggattgatcggtgtccccggagtccctggtttgcctgga
gaccccggtcaggatggattaacaggcttgaagggagagaagggtgattcatgtactagc
tgtttgtctgctggcccggcggtgggtgacggtgtagctgtgccagggcccaaaggagaa
aaaggaaatcctgggtccccaggagcggggaaacctggcaaaactggaaatcgtggcttg
ccaggtgtgcagggtccctctggtcccaaaggaagcaagggcgatgctggggctgcagga
gtgggccttccgggaccacaaggcattgaaggaccaagaggtctcccaggactattagga
ccccctggtgttacaggactgccaggttctgttggccctgcaggggaaaagggatcaaga
ggtgatgcgggactcccagggccacagggaccaccgggatttggagtagcgggaccgccg
ggtaaagacggagcctctgggcccagagggcttccaggagctgacggcgcacccggattt
catggagctaagggggacaagggggaacgaggagagtgtaactgcaacccgcccgggcct
acaattgtaggtggacctggagccccaggaaccccaacaaacacgtggcagcccgggcct
cagggccctcctggacctcctggccctcctggcccccctggacctcagggagtcattgga
atccaaggtcctcagggtatccctggaaacgacggcataccgggtttgcctggaaagagc
agctatactggaccacaaatgcctcaagatacaaatatagatgtgggagacgaggattgt
ggagagggctgttctcaggggctgccaggggtcccgggcatggctggtgccaagggtgaa
aaaggagaccagggcaagcctggtgcaacagtcatggacagctgtgacaggtgtttggag
agactgcagaggacacaggcgactgaagcgacgggtgatcgatcttgcaccggaacaccc
ggaattccaggagtgcctggagcaacgggaataaaaggagacaccggttctccgggagag
aggggctcgccaggaccgccaggaatcatgggaccccctggtttcccaggtcctcagggc
ccatctggcttatctggtcagcagggtgaacgagggtcggccggcctcccaggaatgaag
ggcgagcagggccctccagggacgcctggttatcctggaactatggggccacctgggttg
cccggactgaagggtgagcgtggaagcccaggaggtgctggacagaaaggagaatcaggt
cctcctggtagccctgggtatcaaggacaggctggctctccaggcattaaaggagacaca
ggaccagcagggcctgttggttccaaaggtgaccagggtttccaaggacagccgggtttt
ccaggatcaccagggcctcctggtccagccggcaaacctggcagagaaggcatttctggg
ctcaaaggagaaaaaggtaacgacggttccacaggttcccagggaccaactgggccgcct
ggctcaccaggatctccaggcctgatggggcctcccggtattgagggaatggacggaaaa
gatgggaaaccaggactgcggggcgaggcgggccctccaggcccagcgggacctcgagga
atcccaggattcaaagggaaaacaggacacgtaggctttcctggacagaagggagatgtc
gggcctgcaggcccgcaaggaccacccggcaggccaggacatgacggggaccagggaacc
ccaggacttcagggtcgaccgggtcctccaggccagatcggtcccacagggccagcggga
cctccggggcctcctggcccatcaggagtggggatacaaggagacaagggtccctctggg
gagagaggcctcccggggttagttggacctacgggaccaccagggcatccaggacttatg
ggagagcctggcagcgacggtgctgctggtaaagatggaacaccaggcctgcagggggac
agcggacagccaggtcaaaagggagaaccgggggcccctggacagcggggctctccgggc
gagcgaggtagaccggggcccccaggcggaggaggatatctcggcaaggacgcccaaccc
atgatgggaccggtcggccctagaggggaaagaggaagcccgggctctgatggactaccg
ggacctccgggtgcccctgggtctccaggaaacgatgcattcgttaattacgacgacatc
aaaaacttcattcggcaacaggttgtcaagatcttcgatgagaggatgggctactacatg
tctcgcatgcagatgccagtagaaatggtggcatcacccggccgaccagggcccccagga
aaagatggtgtcccaggcactcccggacctcagggtcctccaggagtcccaggacagttc
ggcaggcagggtcgcccgggaggacaaggactccccggaccacgaggaccgtcaggagta
aagggtgacaagggtgttggagagatgggagacgtgggaccacctggagcaccaggcatt
ccaggccctccaggttatggtaaaatgggacctcctggacctgttggccagcagggtgtt
cctgggataccaggctctcctggacagcctggaaccaaaggaaaggaaggccgctgtaat
cctgcagactgcatgagccatcaagtggactacagccccaagggcccgcctgtcaaaggc
ccctggtaa
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integrated database retrieval system
