Xiphophorus hellerii (green swordtail): 116730739
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Entry
116730739 CDS
T07363
Symbol
col8a2
Name
(RefSeq) collagen alpha-2(VIII) chain
KO
K23455
collagen type VIII alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
Motif
Other DBs
NCBI-GeneID:
116730739
NCBI-ProteinID:
XP_032436076
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Position
13:20478846..20533723
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AA seq
685 aa
AA seq
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MPVTMLLAPVCLLLMLGGRAFAGGYPPIPHVKYMQPMMKGPVGPPFREGKGHYVDMPPMM
KGEPGPQGKPGPRGPAGPPGLPGKPGLGKPGLNGQPGLQGPPGFTGIGKPGLPGLPGKIG
PNGMPGVNGEVGPRGEPGPRGLPGPPGIPGPAGLSLNGKPGLPGIRGPPGARGEPGLKGI
SGQPGERGLKGENGNGKPGIPGIRGPPGLKGSTGPPGFPGIGKPGQKGLPGPPGFKGDEG
LPGKLGEPGQPGPPGLQGLPGPAGLGKPGLDGHPGTPGPVGPKGEQGTRGNPGNPGAPGY
GKPGLNGPKGEKGHGGFPGVPGDKGEQGIIGPIGVPGLDGQPGPQGIQGPMGLPGKHGMP
GLKGELGPKGPPGLPGLKGDQGPSGISGRPGFPGEKGISGPNGPIGKPGPKGESGQIGQP
GNPGLTGSPGPKGEVGFIGTPGARGQSGIPGLQGPMGPMGPQGAPGPRGEAGLPGPPGLG
KLGDKGAMGPQGPPGKPGSSGLNGMTGPPGPPGPPGPPGNGQTVAAGDTDASLGGEEVPG
DRKGPAYTQVLSASLAPAFTAILTTPFPPSALPIKFDRTLYNGQNAYSTSTGIFTAPLSG
VYYFAYHMHVKGTSLWVALYKNNVPATYTYDEYKKGYMDQASGSAVLELKEGDEVWVQMP
SDQANGLYSTEYIHSSFSGFLLCPT
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgaccatgctgttggctcctgtctgcttgctgctgatgcttgggggccgtgct
tttgctggaggttacccccccatccctcatgtgaagtacatgcagcccatgatgaaagga
cctgttgggcctccgtttcgagagggcaagggacattatgttgatatgccacctatgatg
aaaggggaaccaggtcctcaagggaaacctggaccaagaggccctgctgggccaccagga
ttaccaggaaagcctggactgggaaaaccaggtctcaatggacaaccagggcttcaggga
cctccagggtttacaggaattggtaagcctggactcccaggtcttccaggaaagattggg
ccgaatggaatgccaggagttaatggagaggttggacctcgtggtgagccaggaccccgt
ggacttcctgggccccctggtatcccaggccctgctggtttatcactgaatggaaagcct
ggactcccaggtatcagaggtccacctggagctcggggtgagccaggattaaaaggtatt
tctggccaaccaggtgaacgtggacttaagggtgagaatggtaatgggaaaccaggaatt
ccaggtatcaggggcccaccaggtctaaaaggcagtacaggaccccctggttttccaggt
attggcaaaccaggacagaaaggtttaccaggaccgcctggatttaaaggtgatgaagga
ttgccaggaaaactaggagaaccaggacagcctgggccaccaggtctacaaggtcttcct
gggccagctgggttggggaagcctggtctagatggacatccaggaacaccaggtcctgtg
ggtcctaaaggtgaacaagggactcgaggaaatcctggaaatcctggcgcacccggctat
ggaaaacctggtctaaatgggccaaaaggagaaaagggtcatggtggatttccaggtgtc
cctggggacaagggagaacaaggaatcattggtccaattggggtgccaggtcttgatgga
caaccaggaccacaaggcattcaaggtccaatgggacttccaggaaaacatggaatgcca
gggctgaagggagagctaggacccaagggacccccaggactgcctggactcaaaggtgac
caaggccccagtggtatctctgggcgacctggtttcccaggggaaaagggcatctctgga
cctaatggtcctattggtaaaccaggccctaaaggtgagtcagggcaaattggccaacct
gggaatccagggttgacaggttctccagggcctaaaggtgaggtaggctttatagggact
ccaggagccagaggccagtctggaattcccggtctccaagggcctatgggtcctatgggc
ccacagggtgcccctggaccacggggagaagctggacttccagggcctccagggttaggc
aaactgggtgacaagggagcaatgggtccacaaggtccaccaggaaaaccagggtcttct
gggcttaatggtatgactggtccaccgggtcctcctggacctcctggccctccaggaaat
ggccaaactgttgctgcaggggatactgatgcaagtctgggtggggaagaagtacctggg
gacaggaagggtcctgcatacactcaagttctctctgcctcactagcgccagcattcact
gctattctcaccacaccattcccaccttccgccctgccaatcaaatttgataggaccctg
tataatggacaaaatgcttacagcacttctactggcatcttcaccgctcctttatctggt
gtctactactttgcataccacatgcacgtgaagggaactagcctgtgggtggctttgtac
aagaacaatgtgccagccacttatacctatgatgaatacaagaaaggctacatggaccaa
gcatctggcagtgcagtcctagagcttaaagaaggtgacgaggtatgggttcaaatgccc
tcagatcaagcaaacggcctttactctaccgagtacatccactcctccttttcaggattc
ctgctctgtcccacataa
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