Xiphophorus hellerii (green swordtail): 116730818
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Entry
116730818 CDS
T07363
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116730818 (vps50)
Membrane trafficking [BR:
xhe04131
]
Protein recycling
Others
EARP complex
116730818 (vps50)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
116730818
NCBI-ProteinID:
XP_032436207
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All DBs
Position
13:18801592..18916021
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AA seq
992 aa
AA seq
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MQKIKSLMARQGLKSPQESMADLSPMENLRIPSTEELRELRQQPIDPQAEQEIIDSIEEV
YFSNDSFDMVRHELEKLPPELNLQELEEYRDKLKRQQAAVSKRVADLILEKQPSYVKELE
RVTALQTNLQLAAVICTNARRQLKVSKEEFTEASLGLLANQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSRTCKHFDVLHYTKVQKAYTLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITLDSYIPCLTDLCKALWEVMLSYHRTMQWHEEHDKQKAVSSQDD
AAGEPDELTVDRSYVKKKLEHGLTRIWQDVQLKVKVYILGTDMSNFKYDDFIVVLDVISR
LMQVGEEFCGSKSEVLQESIKRQSVNYFKNYHRARLEELRMFLENETWELCPVKSNFNIA
QLHEFRFMGQCRSPSVSPSRQAASSAGPALEELSLFQQYHQDGNPFEMHIEHKEEETEDV
LASNGYESDELEKSVYQDYDSDSDVPDELKQDYVDEQTGDAPLKSVSRETIRSKKKSDYN
LSKASAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCVSQLFDYYLYAVYTFFGRND
MPVPSPSLPTYSGREAVPARVVGPACLYESSGLGLISSRLRTTLNRIQESLIDMDPVGEN
AGVHGPPEDRKEKVPSPHLSQMVILTDSGTLYGLAQRVVATESLVFLAEQFESLQSHLDT
MMPAAKKPFLQQFYSQTVSTASELRKPIYWIVAAKAIDYEQMLLMMAGVKWDIKEIMSQH
NVYVDVLLKEFEQFNKRLGDVSRHVRIPLPVSNVLWEHCIRLANRTLVEGYANVKKCSNE
GRALMQLDFQQFLMKLEKLTDLRPIPDKEFVETYIKAYYLTENDMEQFIKNHREYSMKQL
ANLVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagataaagtctcttatggcccgccagggcctcaaaagcccccaggagagcatg
gctgatctgagtccaatggagaacctaaggatcccgagcacggaggagttgcgggagctg
aggcagcagcccatcgacccccaggcggagcaggaaatcattgacagcatcgaagaggtc
tacttctccaacgactccttcgacatggtgcggcacgaactggagaagctcccacctgag
ctgaaccttcaggaactggaagagtacagagacaaactcaagagacaacaggctgcagtt
tctaaaagggtcgctgatctcattctggagaagcagccttcttatgtcaaggaactggag
agagtgacagcattacagaccaatctgcagctggcagcagtcatttgcactaatgcaaga
agacaactcaaagtttccaaggaggagttcacggaggccagcctgggtctgttagccaat
cagaggaggcgacagctgctgacagggctgctcaagtcactgaggaccatcaagaccctg
caaaggacagatgtaagactcagcgagatgctcgaggaggaagactatccaggtgcaatc
cagctttgtctggaatgtcaaaaggcggccagcaccttcaaacactacagctgcatcagt
gagctgaactctaaactacaagacactcttgagcaaatagaggagcagcttgatgtcgcc
ctgtcaaggacttgtaagcactttgatgtgttgcactacaccaaggtccagaaggcgtac
acgctccttgggaaaacccagactgctatggatcagctgcacatgcacttcacccaggct
atccacaacacagtgttccaggtcgtcctggggtatgttgagctgtgtgctggcaacgca
gacaccaagttccagaagatgcaatataaggacttgtgcacgcacatcaccctcgacagc
tacatcccctgcctgacagatctctgcaaggctctttgggaggtgatgctgagctaccac
cgcaccatgcagtggcatgaagagcatgacaaacagaaggctgtatcatcacaagatgat
gcagcaggagagcctgatgagttgactgtggaccgcagctatgtgaagaaaaagctggag
catggactgacgcggatctggcaggatgtccagttaaaggtgaaggtgtatattctggga
acggacatgtcaaacttcaaatacgatgatttcatagtggtactagatgtcatcagcagg
ttgatgcaggttggtgaggagttctgtggcagcaagtcagaggttctgcaggagtctatc
aaacgccagagtgtgaactacttcaaaaactatcacagagcacgactggaagagcttagg
atgtttctggaaaacgagacatgggaactatgtccagtcaagtccaactttaacattgcc
cagctccatgagttcagattcatgggccagtgccgctctccctccgtttccccaagcaga
caggctgcctcctcagctggcccggctctggaggagctgtcacttttccagcagtatcat
caggacgggaacccctttgagatgcacattgagcacaaggaagaggagacggaggatgtt
ctcgcatctaacgggtatgaatcagacgagctggagaagagtgtctatcaggactacgac
agtgacagcgacgtcccagatgagctcaagcaggactatgttgatgagcagacaggcgac
gcccctctgaagagcgtgtcccgagagaccataagaagcaagaaaaagtcagattacaac
ctgagcaaggccagcgcgccgattctcaccaacaccaccctcaacgtcatccggcttgtt
ggaaagtacatgcagatgatgaacatcctgaaaccgattgcctttgatgtcatccactgt
gtatcgcagctctttgattactacctttatgctgtatacaccttctttggacgcaatgac
atgcccgtcccaagcccatctctgcccacctatagtggcagagaggcagtcccagccagg
gtggtgggccctgcttgcttgtatgagtcatcgggtctgggcctcatcagcagccgactg
agaaccacactgaaccggatccaggagagcctcattgacatggatcctgttggggagaat
gcaggagtccatggccccccagaggacaggaaggagaaggtccccagtcctcacctgagc
cagatggtgatcctcacagacagtggaactctctatgggctggcacagagagtggtggcc
accgagtctcttgtgtttttggctgagcagtttgagtccctgcagtctcatttggacaca
atgatgcctgctgccaagaaaccattcctgcaacagttttattcccagacggtgtccaca
gccagcgaactgcgcaaaccaatatactggatagtagcagccaaggctatagactacgag
caaatgctgcttatgatggccggagttaaatgggatatcaaagagataatgtcgcagcac
aacgtttatgtggatgttctgctgaaggagtttgagcaatttaacaagcggctcggtgat
gtttccagacatgtgcgcattcctctgcctgtgtccaacgtcctgtgggagcactgcatc
cgcctggctaacaggactttggttgaaggctacgctaacgtaaagaaatgtagcaacgag
ggccgagccctgatgcagctggactttcagcagttcctaatgaagctggagaaactgact
gacctgcgtcccatccccgacaaggagtttgtggagacctacatcaaggcgtattacctt
actgagaacgacatggagcagtttatcaaaaaccacagggagtactccatgaagcagctg
gccaatttggtgaacgtgtgtctgggctcgcacatcaacaaaaaggctcgtcagaaactc
ctggctgccatcgatgacatcgacagaccaaagagatag
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