Xiphophorus hellerii (green swordtail): 116730825
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Entry
116730825 CDS
T07363
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04510
Focal adhesion
xhe04512
ECM-receptor interaction
xhe04518
Integrin signaling
xhe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116730825 (col1a2)
04518 Integrin signaling
116730825 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116730825 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116730825 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xhe00536
]
116730825 (col1a2)
Glycosaminoglycan binding proteins [BR:
xhe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116730825 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
116730825
NCBI-ProteinID:
XP_032436216
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Position
13:19083387..19102429
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AA seq
1351 aa
AA seq
DB search
MLSFVDTRILLLLAVTLYLTSCQSGPRGDKGPRGDRGFPGPNGRDGKPGLPGPAGPPGPP
GLGGNFAAQYDGSKAPDPGPGPPGLMGPRGSPGMPGPQGSQGQTGHAGEPGQPGNDGPVG
ARGPPGPPGKSGEDGNNGRPGKPGDRGAAGPQGARGFPGTPGLPGMKGHRGYTGIDGRKG
EPGSAGAKGESGASGSPGSSGLAGQRGQPGERGRPGPAGPAGSRGSDGNVGPSGPAGPLG
AAGPPGFPGGPGPKGELGAAGGTGPSGPQGSRGEPGSNGVVGPIGPPGNPGANGLNGAKG
AAGTPGSGGAPGFPGPRGGPGPQGPQGAAGPRGLSGDPGPQGVKGDTGGKGEPGNAGPQG
PPGTQGEEGKRGPTGEIGANGPAGSRGARGAPGSRGLPGSDGRTGPIGMPGARGASGAAG
PRGPPGDAGRAGEPGPAGLRGLPGSPGSSGPPGKEGPSGPAGQDGRSGPPGPTGPRGQPG
NIGFPGPKGPSGEPGKPGEKGPSGPTGLRGPPGPDGNNGATGPMGAAGGAGEKGEQGPAG
APGFQGLPGPAGSVGEAGKSGERGIPGEQGAAGPAGGKGERGNPGAAGASGAQGPIGPRG
PAGAPGPDGGKGEPGAAGAAGAAGHQGSAGIPGERGVAGGPGGKGEKGETGHRGPDGNSG
RDGSRGPAGPPGPPGPTGANGDKGEVGSFGPSGPAGPRGPSGERGEVGPAGAPGFAGPPG
LDGQAGARGERGPAGGKGESGSAGPAGPAGQSGPAGPAGSAGPPGARGETGPPGLTGLPG
AAGRVGAPGPAGIVGPPGPSGNSGKDGPRGLRGDSGPAGPSGEQGMVGPPGPPGEKGPSG
ESGPAGLPGAPGPTGPLGITGFVGLPGARGDRGTPGGAGAVGEPGRPGPAGPSGARGPPG
NIGMPGMTGPQGEAGREGSPGNDGPPGRPGASGFKGDRGEPGSPGALGLAGAPGPAGPTG
AAGRPGNRGEAGPSGPSGPAGPAGARGAPGPSGPRGEKGVAGEKGDRGMKGLRGHPGLQG
MPGPSGPPGESGPAGALGHAGPRGPSGPNGPPGKDGRAGTHGPMGPPGSRGPPGYVGPVG
PAGSPGLPGPPGPSGGGYDVSGYDEYRADQPALRAKDYEVDATIKSLNTQIDNLLTPEGS
RKNPARTCRDIKLSHPDWSSGFYWIDPNQGCINDAIKVFCDFTTRETCIYAHPESIARKN
WYRSTDNRKHVWFGETINGGTEFTYNDETLSPQSMATQLAFMRLLSNQASQNITYHCKNS
VAYMDGESGNLKKAVVLQGSNDVELRAEGNSRFTFSVLEDGCTTHTGEWSKTVIEYRTNK
PTRLPILDIAPLDIGGPDQEFGLDIGPVCFK
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatactcggattctgttgctgcttgcagtaacgttatatctaaca
tcatgccaatcgggtcccagaggagacaaaggacctcgaggtgacaggggttttcctggc
cctaatggaagagatggcaaacccggactgcctggccccgctggccctccaggcccccct
ggactcggaggaaactttgctgctcaatatgatggttcgaaagcccccgatcctggaccc
ggacccccaggactgatgggacccagaggttcccctggaatgcctggaccccagggatct
caaggacagactggacacgctggtgaacccggacagcctggaaacgacggccctgttgga
gcccgtggaccccctggaccacctggcaaatctggagaagatggaaacaatggcagacct
ggcaagcccggagacagaggtgccgccggccctcagggtgctcgtggattcccaggaact
cctggacttccagggatgaagggacacagaggttacactggtattgatggacgtaaggga
gaacccggttctgctggcgccaagggtgagtctggtgcctctggatctcctggaagttct
ggactggctggacaacgtggtcagcccggtgagagaggtcgccccggccctgctggtcct
gctggttctcgtggttctgatggcaatgttggaccttctggcccagctggtcctttgggt
gctgctggccccccaggcttcccaggcggtcctggacccaagggagaacttggagccgct
ggaggcactggcccatctggacctcagggatctagaggagagcccggatccaacggtgtt
gttggcccaattggtccccctggcaaccctggtgctaatggtctgaatggagccaaggga
gctgctggaacccccggttctggtggagctcctggtttccccggaccaagaggaggacct
ggacctcagggacctcagggtgctgctggaccaagaggactttctggtgatcctggtcct
cagggtgtcaagggagacactggtggcaaaggagagcctggtaacgctggccctcaggga
cctcctggaactcaaggtgaggagggcaagagaggacccactggtgagattggtgctaat
gggcctgctggcagccgtggtgctagaggtgctcccggaagccgtggtctgcctggttcc
gatggaagaactggcccaattggtatgcctggtgcccgtggtgcttctggtgctgctgga
cctcgtggaccccctggagatgccggtcgtgctggcgagcctggccctgccggtctcaga
ggtctcccaggaagccctggaagctctggacccccaggaaaggagggaccttctggtcct
gctggacaagatggccgttctggacctcccggcccaactggacctagaggccagcccgga
aacattggtttccctggacccaaagggccctctggagagccgggcaaacctggagagaag
ggacctagtggccccactggtctgagaggaccccctggacctgacggcaacaacggagcc
actggccccatgggagctgctggcggtgctggtgagaagggagagcagggaccagctgga
gctcctggcttccagggtctgcctggacctgctggatctgtcggtgaggctggcaagtct
ggagaaagaggtatcccaggagagcagggagccgctggaccagctggtggcaagggagag
cgtggtaacccaggtgctgctggcgcttctggagctcagggaccaattggaccccgtgga
ccagctggagcccctggacctgatggtggcaagggagagccaggagctgctggagctgct
ggggctgccggacatcaaggatctgctggcatccccggtgagcgtggtgtagctggtggt
ccaggaggcaagggagagaagggagagaccggacacagaggccctgatggaaattctggc
agagatggctctcgtggccctgctggacctcctggccctcctggacccactggagccaac
ggtgataagggtgaggttggttcctttggaccctctggccctgctggacctcgtggaccc
tctggtgagcgtggagaggttggacctgccggagcccccggatttgctggaccccctggt
cttgatggtcaggccggagccagaggagagcgtggacctgccgggggaaagggagagtct
ggatccgctggccctgctggacccgctggacagtctggacctgctggccccgctggctct
gctggacctcctggcgctcgtggagaaactggccctccaggtctgactggtttgcctggt
gctgctggcagagttggtgctcctggccctgctggtattgtgggacctcctggcccctcc
ggtaactctggtaaagacggacctcgtggtctccgtggtgactctggccctgctggtcct
tctggtgagcagggaatggttggaccacctggtcctcctggagagaagggaccctcggga
gagtctggccccgctggacttcctggtgctcctggacccactggccctctgggaattaca
ggattcgttggtctgcctggtgctagaggagatcgtggtacacctggtggtgctggtgct
gtgggagagcctggtagacctggacccgctggtccatctggagcccgtggtccccctggt
aacattggcatgcctggtatgaccggacctcaaggagaggctggacgcgagggtagcccc
ggtaacgatggaccccctggtcgtcccggtgcctctggattcaagggagatcgtggtgag
cctggatctcctggtgccttgggacttgctggtgctcccggacctgccggaccaactgga
gctgctggtagacctggaaaccgtggagaggctggcccatcaggtccttctggacccgct
ggacctgctggagccagaggcgctccaggaccttctggaccccgtggtgagaagggagtt
gctggagagaagggagacagaggcatgaagggtcttcgtggacatcctggtctccaggga
atgcccggaccttctggacctcctggtgagagcggtcctgctggagcccttggacatgct
ggacccagaggaccttctggacccaatggaccccctggtaaagatggtagagctggcaca
catggtcctatgggtcctcctggttcccgtggacctcctggatatgttggaccagttggc
cctgctggatctcctggtctgcccggacctcctggcccatctggtggtggatatgacgtc
tccggatacgatgaatacagagctgatcagccagctctcagagccaaggactacgaagtc
gatgccaccatcaagtctctcaacactcagattgacaacctgcttacccccgagggatcc
agaaagaaccctgcccgcacctgccgcgacatcaagctcagtcaccccgactggagcagc
ggattctactggattgaccccaaccagggctgcatcaatgatgccatcaaggtcttctgc
gactttaccacccgcgagacctgcatctatgcccacccagagagcattgcacgcaagaac
tggtacagaagcacagacaacaggaagcacgtgtggttcggagagaccatcaacggcggt
accgagtttacctacaacgacgagaccctcagcccacagagcatggccacgcagctggct
ttcatgcgcctgctttccaaccaggctagccagaacatcacctaccactgcaagaacagc
gttgcctacatggatggtgagagcggcaacctgaagaaggccgttgtgctccagggctcc
aacgacgtggagctcagggccgagggcaacagccgcttcaccttctccgtgctggaggat
ggctgcactacacacactggtgagtggagcaagacagtgattgagtacagaacaaataaa
ccaactcgcctccccatcctcgacattgcacctttggacattggtggacctgatcaggag
tttggtttggacattggcccagtctgtttcaaataa
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