Xiphophorus hellerii (green swordtail): 116730846
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Entry
116730846 CDS
T07363
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116730846 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116730846 (edc4)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116730846 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
116730846 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EDC4L
Beta-prop_EML_2
WD40_Prp19
WDR55
SYCP2_ARLD
Band_7
Motif
Other DBs
NCBI-GeneID:
116730846
NCBI-ProteinID:
XP_032436256
LinkDB
All DBs
Position
2:complement(2479966..2519507)
Genome browser
AA seq
1386 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGSSADMQPSEDQRKLSFNGELNGLLGAGLLGSSLS
ESTRPISTDVSVQESQRICLTGDDGSTCIPIVLNNVEIEASQDSGINSKARGSNKVKIQP
VAKYDWEHKYYYGRLIAVSNSFVAYAIRGANNHAMIRVLSLDFSERSLLKGFTGAVTDLA
FAHLDSSLLGCVDEAGNLMVWHLTLTRSKILDEIVVHIQRPEDAPLNSHRRLIWCPYILE
DSEENQDDTSQTLALLHEDGAEVWDLEVLRANNSSWPVDVSEIKDGLIIVKGHTQRVSEG
ALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHEGRPLSCLLFCDNHKRQDP
EVPFWRFLITGADQNQELKLWCTVSWTCLQTIRFSPDPFNSTVLPSLKASLDLAAEYLIL
TDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVRDVTHSRLRHTEVLPAEEE
SESMSTEGTQGPAESKSGIQIKLYCVHTKSLQDVQIWFQPNAGFNTSGFLPHSDSQDGFA
GFPDHLTDHSSDKDSGSGSQSDLRKIPSLPVPSDFLSNSGPSGGPMPKLMTPDAFMTPST
SVPASPGSSASSLTIVTAISSNSDSTNRAMDDVSQSPIRGENNNGCSSLGLSVATSSPRA
APAVLLPGLENLQTLASPSGPLGLDSPQVPDSPLLPLLASPSRARSPDVISSASTVMSQD
MPEIATQTLQLQRSHGLEALQLPALQTDSMTSAACALHLLTSPRAATNNGLLPLELGGAE
GSPMADDSESRLGNKPSLLENTLSQENAGVSGGSLDGSVSHTSWPAAPDITRETRNSLRD
NGLAECLREESSERCLSSPYHRRSYHLPQNDSQDVGADQSDPDDEIASLASSSGNCGSRS
SHRMPVKDWKSSPRASPKLKRKLKKDDSESSQPRHMDPGQFNTETQDELLMLLRSQQREL
TDLCSLVETMPGTIMAQVEHVLMKHQEQEQRRLDRALAENQSRQQQLHEQLSQQLSHALS
TALTNRMDKVLREELKKAVPQTISKSLEPVTGQLNNSIAAKMAAVEVTIKDIVIKVVKSK
NTTDAMGRAAAEAMQGPIQAAYKDVFQSTVLPVFERGCQSMFQQINDSFKQGTQDYIQQL
EAHLKSRKQREQEARDPVIGQLQQTIDGFQSCTDQLASSVSTAVRAEVQHQMQVVVGNLQ
ESILSHLQRIVKGEVSLAMREQQAVVTSSIMQAMRSAAGTPVPTAHLDYQSQQANILQLL
QQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQTPCPLSQPVLLSLIQQLSSNLATR
SQLKISYLEDAVMNLDHSEPLTRDHMSSVLAQVRSKLLAFLQQDPHSPLSKRARGLLLML
NGVVNH
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctaattctaacatagacatcgagggagcgacccagcacctccgggacatcctg
aagctcgaccgtccggggagcagcgccgatatgcaaccaagtgaagatcagagaaaactg
tccttcaacggagagctgaatggtttactgggagcaggactactggggagcagcctatct
gaatccaccagacccatttccacggacgtcagcgtccaggagagccagaggatctgcctg
actggtgatgatgggagcacctgcatccccatcgtcttaaacaatgtggagatagaggcg
agccaggactcaggtatcaacagcaaggcgcggggcagcaacaaggttaaaattcaacca
gtcgccaagtatgactgggagcataagtattattatggccgactgatagccgtgtccaac
tccttcgtcgcctacgccatcagaggagccaacaaccatgctatgattcgcgtgctgagt
ttggacttcagcgagcgctccttgctgaagggcttcaccggcgccgtcactgatcttgct
ttcgcccacctcgactcctctctgttgggctgcgtggatgaggcgggaaacctgatggtc
tggcatctcacgctcacgagaagcaaaatactggatgagatagtggttcacattcagcgt
ccagaagacgctccactgaactcccacagacgcctcatttggtgcccgtacatcctggaa
gacagcgaggagaaccaggatgacaccagccagacactggctctcctgcatgaggacggg
gctgaggtttgggaccttgaagttttgagagccaataacagcagttggccagttgatgtc
tcagaaatcaaagatggcctcattatagtcaaaggacacacacagagagttagtgaaggt
gctctgtctcctgatgggaccgttttggccacagcgagccacgacggttacatcaagttc
tggcagatctacatagaaggaggacaagataagcccagatgtctccatgaactccgacct
cacgaaggacgtccgctttcctgtcttctcttctgtgacaatcacaaacggcaggatcca
gaggttccgttctggaggtttctgataaccggagcagaccagaaccaggagttgaagctt
tggtgtacagtttcctggacctgcttgcagaccatcaggttttctccagatccattcaac
tctacggttcttcccagtctcaaggccagtttagatcttgctgctgaatacttgatcctc
actgatgtgcaaagaaaggtcctctatgtgatggagctgcggcaggacctggagaagggc
aaagcgagcttcacggccgtgtcggagttcctgctcacccaccctgtgctcagcttcggg
gtgcgtgacgtgacccacagccgcctgaggcacaccgaggttctgccggcggaggaggag
agcgagagcatgtcgacagagggcactcaaggacctgcagagtccaaatctgggatccaa
attaaactctactgtgttcacacaaagagtttgcaggacgtacagatctggtttcagccc
aacgccgggttcaatacgtcaggttttcttccccactctgactcccaagatggttttgct
gggtttccagaccatctcaccgatcacagctccgacaaagattctggaagcggctcgcag
tccgaccttaggaagatcccctcacttcctgttccctctgacttcctttctaactctgga
ccatccggcgggccgatgcccaagctgatgactcctgacgccttcatgacaccaagcact
tcggttcctgcgtctcctggcagcagcgccagcagtctgactattgttacagccatcagc
agcaactctgactcaacaaatagagccatggacgatgtcagtcagagtcccatcagagga
gaaaacaacaatggctgcagcagtttgggactctctgtcgccaccagcagtccaagggct
gcacctgcagttctgctgcctggactggagaatctgcagactctggcttcccccagcggc
cctctgggcctcgattcgcctcaggtcccagattctcctctgctgccgctgctggcctcg
ccgagccgggcccgctcgccagacgtcatctcctccgcctctaccgtgatgtcgcaggac
atgccggagatcgcgacgcaaacgctgcagctgcagcgcagccacggcctggaagccctg
cagcttcctgcgctgcagacagacagcatgacctctgctgcgtgtgctctgcacctcctg
acgtcgccacgcgccgccaccaacaacggtttgttgccccttgaactcggaggtgctgag
ggatcgccgatggcagacgactcggagtccagactcggtaacaaaccgtctcttctggag
aacacattgtcgcaggaaaacgctggggtcagcggagggtcgttggatggcagcgttagc
cacacgtcatggccagcggctccagacatcaccagggaaaccaggaacagcctcagggac
aatgggctggcagaatgtttgagagaggagtcgagtgagcgctgcttgagctctccctac
caccggcgctcctaccacctcccccagaacgacagccaggatgtcggcgctgaccagagc
gatcctgatgacgagatcgccagcctggcttcatcctctgggaactgcggctctcgctcc
tctcacaggatgccggtgaaagactggaagagctcgccacgagcctcgccgaaactcaag
aggaaactcaagaaagatgacagtgaatcttctcagcccaggcacatggatcccggtcag
tttaacacagagactcaggatgagctcctgatgcttctgcgcagccagcagagggagcta
acggatctgtgttctctggtggagaccatgccgggaaccatcatggcgcaggtggagcac
gttctgatgaaacaccaggagcaggaacagcgcagactggaccgagctctggccgagaat
cagagccgccagcaacagcttcacgagcagctgagccagcagctgagccacgccctcagc
acagcgctgaccaacaggatggacaaagtcctgagagaggagctaaagaaagcagttcca
caaaccatttctaagagtctggagccggtgacggggcagctgaacaactctatcgccgct
aagatggccgccgtggaggtcacgattaaggacatcgtcatcaaagtggtcaaatccaag
aacactacagacgccatgggccgggccgcggcggaggccatgcagggccccatccaggcc
gcctacaaagacgtcttccagagcacagtgctgcccgtgtttgaaagaggatgccagtcc
atgttccagcagatcaacgacagcttcaagcagggcacgcaggactacatccagcagctg
gaggcccacctgaagagccggaagcagagggagcaggaggcgcgggaccccgtgatcggt
cagctgcagcagacgattgacggcttccagagctgcaccgatcagctggccagtagcgtc
tctaccgccgtgcgagctgaggtccagcaccagatgcaggtggtggtggggaatctgcag
gagtccatcctgagccacttgcagcgcatcgtgaaaggcgaggtgagcctggcaatgagg
gagcagcaggccgtcgtcacctccagcatcatgcaggccatgcgctccgccgccgggacg
cccgtccccaccgcacacctcgactaccagtcgcagcaggctaacatcctgcagctgctc
cagcagggccagctcaaccaggccttccagcaggctctgtctgcgacggacctgaacctg
gttctgtacgtgtgtgagaccatcgactcccagcaggtgttcggccagacgccatgcccc
ctgagccagccggtgctgctgtcgctgatccagcagctgtcctccaacctcgccacgcgc
tcccagctcaagatcagctacctggaggacgcagtgatgaatctggaccacagcgagccg
ctgaccagagaccacatgtcgtcggttctggcccaggtccgatccaaactgctggccttc
ctgcagcaggaccctcacagcccgctcagcaagcgggcgcgcggcctgctcctgatgctg
aatggagtcgtcaaccactag
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