Xiphophorus hellerii (green swordtail): 116731141
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Entry
116731141 CDS
T07363
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xhe03000
]
116731141
Transcription factors [BR:
xhe03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
116731141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
116731141
NCBI-ProteinID:
XP_032436569
LinkDB
All DBs
Position
13:complement(2155117..2196568)
Genome browser
AA seq
2285 aa
AA seq
DB search
MKPIKKQGRRSPQSTRTKGGKRRGVGETSDGGEKRDSDENRDESGSPQNRTLSSSISSSS
HSDSSQAGLVTTRDASDGEGMSETLVLMDSGKLLTSSDERSGRSALSGSSSHCDSGGSSC
SNSSTPSANNSPNPASSRKTATFKARVPKKKYTSEHCSTATASNHSDPPSSTPPPPSGGV
LNRGSTGSGVEANVSYSDSNSQSGNLMDNFPSGATGRENSQESPGPPTLSLVMERPRRNE
ERVSPSPLPRCSSTDTASEHSADLEVVGDMPAIPHSMPRSAPSFSDSLSDTLAKGLKNQR
VLARQLRRHKSEEVGGEMRDKGRSSEFVFRAGVVRKVSGEFGCLEVQLNGEKTMCSYPYR
HDSPPGVVEIILDAPPPGVQTIQIGTRVCVPFGDEDSNEGQLQWYREGVVTEVDTHPAVA
NRYRVLLSEGRPHSLDVEDGRGSTHAVWVSRQTLRLLVPPWDLDLPSCGGHGGEEGVREN
DKKHEEREDIDVEQEVCNLSQGMNTGMGSMFGREISYPGIITVSSPVTREWEIEKDRERE
RERLRKQERDRERENNAKQQQHHPYLPLTPEEDMEVSHFNMIPLGAIISGTKSRPVHQIV
SKPPSGYLNSHLPVVRGIGIPSTHLALSPHPNPSNVLLGLDSTNAAAGAVITAPQLPPLP
PISSSVSSRAEKASGGGSAGGGGGPVLGSNSSSANRSRTPLTAAQQKYKKGDVVCTPTGI
RKKFNGKQWRRLCSREGCSKESQRRGYCSRHLSMRTKEMEASGGGRERSGASSTGTLTPS
DLRLGSGRASSEFDWDETSMESSEASSRGGDSRPRLVLPSLLPQDLSRFDFDECEAATML
VSLGGSRSVTPSFSPISNQSPFSPTPSPSPSPLFGFRPATFSPITAPPSLNPRRPRQLSG
TKMGTPGSERERHLSGIVPSIQTNLTFTVPMSPSKRRPETHPPPPLHLIQDYQNKTDQQQ
LMGAGGSMAGDPAAFRVLSPHSQPTTPSSLSFSRPRSATSRPSSSAASTPPPMLVSPTPP
SPLPQEPSPRRIVPLRDSPVIVRNPDVPLAKFSDGPLVKRERNQMREKNQPQHSTPPGLQ
APVPINGATTNPAVLLRNPASTLVLVTSSSSLTPVTAGHAALSGSSVSAPSGSALSLSGS
GGRDRKPEGYPDTSGGALPQPVACHPTPTALLPLILPAESPHPAPRKQIIMGRPGTVWTN
VEPRSVPVFPWHSLVPFLDSSQSGAAGQPADGQQLVNQSKEPRCGVALVSEGRAGPPEPD
RGSPSRPPPTNDNPPADRGGADSETESDTDDPFSPGVGNDPSPSAGPMKRRTQSLSALPK
DGDRKREKDYIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPNEKQKY
HDLAFQVKEAHFKAHPDWKWCNKDRRKSLSEGRGTPKELRERSMSESMDALSESQVLEGK
GGGPGWPGASERRGRGSGGQHPRPRAFSQSAVHTLEQRERQRELEKEDGTGLFRSRPPPQ
YHSCANEDVTSDEERMVICEEEGDDDVMEDSCPEGSIDLKCKERVTDSDEDEPDGQQDVQ
PENRSSPSVSDSSAKGEAGGPGDGEDRNRKRGAEAAEQEEGGTRKKEVSGGGSGVSVGPL
HQGQVLGGVRVAPPAVRLAASAPIAIASKPVDGGAALSSLSQEKKTNVLIGGGGTQLAAG
VQTQASVLPSKMLVPMATVRTGSTPPQPSISLVAPPLPVQNGTATGNKIIQLTSMPVVQT
NVHPSPGSPFPVSMATVMAPGATPPQPVLLTSPPTRITYVQSSPGVTTATPQQGAQPPGP
AYLSSHLATLGFTAIAPAGQTLVQPLLAQTPALGAQSQTPPGQTAAGRQVLTAIYPAQTV
ALATGVVPLAAAVPPTVASPAQDAINPASPSTKAVQGSAVAATFQLGTGMKVEVKQESQL
DSETEGSSGCNPSCSMGSCENGGATVKKEEDISLSIKEENMCDEIERERQSEADEERDGV
MKESRKEAKETDRDDRNATNNSKEAGPRSPPPPPPPSSGLDPPPPPPAEKETPSFSSSSS
KRIKFRPPPLKKTPDAHDKVLSETSFEERFAELPEFNPEEILPSPTLQSLATSPRAILGS
YRKKRRNSTDLDGAAEDPSSPRRKTRRLSSCSSEPSTPKSAAKCEGDIFTFDRPGATVAE
SPPGPEGDVPLGDPDRVPYSSLRRTLDQRRALVMQLFQEHGFFPSAQATASFQARYPDTF
PTKLCLQLKIREVRQKIMQTATPGTLESSDAGPAPSHCQSARDDGGAELQGEKGQNLEEP
KNEGS
NT seq
6858 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgataaagaagcaaggtcggcgctcccctcaatccactcggaccaaaggcggg
aagcgccgcggagttggggagacctcagatggcggagagaagagagattcagatgagaac
agagatgaaagcggatcccctcaaaaccgaactctctcctcgtctatctcctccagttcc
cactcagactcctctcaggccggtctagtgacaacgcgggacgcttcggatggggaggga
atgtccgagactttggttttaatggattcagggaagctgctgacatcctctgatgaaagg
tccggaaggtcggcgctaagcggcagcagtagccactgtgacagcggtggcagcagctgc
agcaacagcagcacgccgagtgccaacaacagtccgaatcccgcctccagccggaaaacc
gccactttcaaggcacgcgttcccaagaagaagtacacttctgagcactgctcaacagct
actgccagcaaccatagcgaccctccatcctctacaccccctcctccaagcggtggggtc
ctcaaccgggggtcaacgggttcaggagttgaagccaatgtctcttattctgacagcaac
agtcagagtgggaatctgatggacaactttcccagtggagcaactggcagggagaattcc
caagaatccccaggacctcccacattgtctcttgtaatggaaaggcccagaagaaatgaa
gagcgagtttccccgagccccctgccccgatgttcttcaacagacactgccagcgaacac
tctgctgatctggaagtggtcggtgacatgccggccatcccacattctatgcctcggtct
gcgcccagcttttccgacagtctgtcagacaccctggctaaaggattgaaaaaccaacgc
gtcctcgcccgccagctcaggaggcacaaatctgaggaagtagggggcgaaatgagagac
aaagggaggagttcagaatttgtgttcagggctggagtggtgcgtaaggtcagcggcgaa
ttcggttgtttggaggtgcaactgaacggcgaaaagacgatgtgcagttatccttaccga
catgatagccctccaggggtggtagaaattattttagatgcacctccacctggtgtccaa
acaatacaaattggcacccgtgtctgtgtaccatttggtgatgaagatagcaacgagggc
cagttgcagtggtacagagaaggtgtggtgactgaagtggacacacatcctgccgtggcc
aaccgttaccgtgtcctgctgtctgaaggaaggcctcattctctggatgtagaagatggc
agaggttctacccatgctgtatgggtctcccgacaaactctccgtcttctggtgccaccg
tgggacctagatttgccatcctgcggtggccacggaggagaagagggcgttagagaaaat
gataaaaaacatgaagaaagggaagatatagatgtggaacaggaggtgtgtaacctcagc
caaggaatgaacactggcatgggttcgatgtttgggagggaaatatcgtacccgggtatt
atcactgtctcctcaccagttactcgagaatgggaaattgagaaagaccgggaaagggag
agagagcgtttgaggaaacaggagagagacagagaaagggagaataatgcaaagcagcag
caacaccacccatatttgccacttacccctgaagaagacatggaggtgtcccacttcaac
atgatcccactcggggcaatcatatctgggaccaaatcaagaccagtacaccagattgtc
tcaaagcccccgtctggctacctcaattcccacctgcctgttgtgcggggcattgggatt
ccttccacacacctggccctcagtccccaccctaatccgtcgaatgtcctcttaggcctt
gactcaacaaatgccgcagctggtgctgtcattactgccccccagctgcctcctctgcct
cccatctcctcctctgtgtcctccagagcagagaaggcttctggaggaggatcagccggt
ggcggaggaggaccagtgttgggttcgaactcttcctctgcaaaccgttcccgcactcct
ctcacagcagcccagcaaaagtacaagaagggagatgtggtgtgcacaccaacgggcatc
cggaagaagttcaacgggaagcagtggaggaggttgtgttctcgggagggctgttccaaa
gagtcccagcgtcgaggatactgctccagacacctttcaatgaggaccaaggagatggag
gccagcggaggcggccgggagcgcagtggagccagcagcaccgggactctaacgccgtcc
gatctccgactgggcagtgggagagccagctcagagtttgactgggatgagacgtcaatg
gaaagcagtgaagccagcagccgtggaggagactcccgtccccgcttagtgctgccatcc
ctgcttccccaggacttgtctcgttttgactttgatgagtgcgaggcagcaaccatgctg
gtttctctggggggttcccgctctgtcacaccttcattctctcccatttccaatcagtct
ccattctcaccaaccccgtcaccctccccgtcgcctctcttcggcttccgccctgccact
tttagtccaatcactgccccaccttcacttaatccacgccgccctcggcagctcagtggc
accaagatgggtacgccgggctctgaacgagagcgccacctgtcaggaattgtaccctcc
atacagaccaacctcacctttacagtccctatgagccccagcaagaggaggcctgagacc
cacccgccccctcctctacatttaattcaggactatcaaaataaaacagaccagcagcag
ctgatgggcgcagggggcagtatggctggagacccagctgctttcagagtcctctccccc
cacagtcagcccacaacaccttcctcgctttccttttcacgccctcgcagcgccaccagc
aggccgtcgtcctccgctgcctctacgcctccacccatgctcgtttctccaacgcctcct
tccccattaccccaggaaccctccccacgccgcatagtaccccttcgcgactccccagtc
atcgtccgcaacccagacgtccccttggcgaagttctcagatggtccattggtaaaaaga
gaaagaaaccagatgagggagaagaaccagccacagcactccactcccccaggcctgcag
gccccggtccccatcaacggggccaccaccaatccggccgtcctcctgaggaaccctgcg
tccaccctggttctggtcacctccagttcttcattgaccccagtcacagcaggtcacgcc
gcgctgtccggatcctctgtgtccgccccgtcgggctccgctctgtccttgtccggttcc
gggggccgggaccggaaacccgaaggttacccggacacctcgggtggtgcgctgccgcag
ccggtggcctgccaccccacgccgaccgccctgctgccgctcatactgccagctgagtcg
ccgcacccggcgccgcgcaagcagatcatcatgggtcgcccgggcacagtttggaccaac
gtggagcctcggtcggtgccagtgttcccctggcattcgctcgtcccgttcctggactcc
agccaatcaggagcggccggccagcctgctgatggccagcagcttgttaatcagagcaaa
gagcctcgctgcggtgtggccctggtgagcgaagggcgggcgggccccccggagccggac
agggggtcgccgtctcgccctcccccgaccaatgacaatcccccagcagacaggggcggg
gcggacagcgagacagagagcgataccgatgatccgttttcccccggtgtggggaacgac
ccgtctccctccgccggacccatgaagagacgcacgcagtcgctcagcgccctgcccaaa
gacggagacaggaagagggagaaggattacatccgccgccccatgaacgccttcatgatc
ttcagtaaacgccaccgagcgctggtgcaccagcggcaccccaaccaggacaaccggacc
gtcagcaagatcctgggcgagtggtggtacgctctgggccccaacgagaagcagaagtac
cacgacctggcctttcaggtgaaagaggctcacttcaaggcccaccccgactggaagtgg
tgcaacaaagaccgcaggaagtctctgtctgagggccgggggacgccgaaggagctgcgg
gagaggagcatgtcggagagcatggatgcgctctcagagtcccaggtgctggagggaaaa
ggtggaggtccgggctggccgggggcatcggagcgtcgagggaggggttcggggggccaa
cacccccgtccccgagccttttcccaaagtgccgttcacaccctggagcagagggagagg
cagcgggagctggagaaggaggacggaaccggcttgtttcgaagccgaccgccgcctcag
taccacagctgcgccaacgaggatgtgaccagcgatgaggagcgcatggtcatctgcgag
gaggaaggagacgacgacgtgatggaggattcgtgccctgaaggctccattgacctcaag
tgcaaggagagagtgacagacagcgacgaggatgaaccggacggacagcaggatgtccag
ccggagaatcgctcctccccctccgtgtccgactcctccgctaagggcgaggccggaggt
cctggcgacggcgaggacaggaacaggaagcggggcgcggaggcagcggagcaggaagag
ggcggtaccaggaagaaggaagtgtctggaggcgggtcgggcgtctcggtcggtccgctc
caccagggccaggttctgggcggggtccgggtagcccccccggcggttcgcctggccgcc
agcgctcccatcgctatcgccagcaaaccggtggatggcggcgccgccctcagctcactc
tcgcaggagaagaagaccaacgtcctgattggaggaggcggcactcagctcgctgcgggg
gtccaaactcaggcatcggtgttgccaagcaagatgttggttcccatggcaacagtgagg
accgggtccacgcctcctcagccctccatctccctggtggctccgcctcttcctgtgcag
aatggcaccgcgacgggaaacaagatcatccagctcacctccatgcccgtggtgcagacc
aacgtccatccgagccctgggagccccttccccgtatccatggcgacagtgatggctccc
ggagccaccccgcctcagcccgtcctcctgacctccccgcccaccagaatcacctacgtc
cagtccagcccaggcgttaccacagcgacgccccagcagggcgcccaacctcccggtccg
gcgtatctctcgtcacacctggccactctggggttcaccgccattgccccggccggacag
accctggttcagcctctgctggctcagactccggccctcggcgctcagtcgcagacgccg
ccgggtcagaccgccgcgggccgtcaggtactaactgccatctaccctgcacaaaccgtt
gccctggcgaccggtgtggtcccgttggcagctgctgtgccgcctaccgtggcttctcca
gcccaggacgcgataaacccggcttctccgtcgaccaaagcggtgcagggttcagcggtg
gcggcgacctttcagctggggaccggaatgaaggtggaggtgaaacaggagagccagctg
gactctgagaccgaaggctcatcaggctgcaacccaagctgctcgatgggcagctgtgaa
aacggaggcgcaacagtgaaaaaagaagaagacatcagcctgagcattaaggaagaaaat
atgtgtgatgaaattgagagggagcgacaaagtgaggcagatgaagagcgagatggagtg
atgaaggagagcaggaaggaagccaaagaaacggacagagacgaccgcaacgcgacaaat
aacagcaaagaggctggacctcgttccccaccgccacctccacccccgtcctcaggtctg
gacccgcctccacctccaccagcagaaaaagaaaccccctccttctcttcctcctcctcc
aagagaattaagtttcgcccccctccactcaaaaagaccccagacgctcatgacaaggtt
ttgtcagagacgtcgttcgaggagcgctttgctgagcttccagagtttaacccggaggaa
attcttccgtcgcccacgctgcagagcctggccacctctccaagagccatcctgggaagc
taccgcaagaagagacgcaactccaccgatcttgacggggcggcagaagaccccagctcc
cccagaaggaagacgcgccgtctctccagctgcagctcggagcccagcaccccaaaaagc
gctgccaagtgcgagggagacatctttacgttcgacagaccaggtgcgactgtcgcagag
tcgcctccaggtccggaaggcgacgtccccctgggagacccggacagggttccgtactcg
tctctgcggaggacactggaccaacgtcgcgcgctggtcatgcagctttttcaagaacac
ggcttctttccttcagctcaggccacggcttccttccaggcgcgctacccggacacattc
cccaccaagttgtgtctgcagttgaagatccgcgaggttcgtcagaagatcatgcagaca
gcgacgccggggaccctcgagtcgtccgacgctgggcccgccccgtcccactgccaatca
gcgcgggacgatggcggggcggagcttcagggagaaaaaggccaaaacttggaggaaccg
aaaaacgaaggatcgtaa
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integrated database retrieval system
