Xiphophorus hellerii (green swordtail): 116731217
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Entry
116731217 CDS
T07363
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116731217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116731217
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116731217
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116731217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4140
Motif
Other DBs
NCBI-GeneID:
116731217
NCBI-ProteinID:
XP_032436747
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All DBs
Position
13:3849883..3879629
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AA seq
908 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANTNQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLIENRKLIETQMERFKIVERETKTKAYSKEGLGLIQKVDPAQKE
KEEVGTWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKKFIEKHRYHI
RMLETILRMLDNDSLQVESIRKIKDDVEYYRESSQDPDFEENDYIYDDLDLDEFPQPLLA
TSPPGPSHLEDEIFQNSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDSEVSQSP
VKNGNPSSSLSSSSSSSSSSSSASGLTSSSLVSVAGGGIGGSGSSHLSAVGGPFSNTLAS
SYSNATQQPPHPSVQQQQQAKNSPSSSAPINSSTSTNSHNASLASSPPSTQGLLTSNSLP
QAPSGPTATSNSLGLSLGPSLGKSSISTSPGLSGMPASLSNMVGLLSSSTPTPYAQAAAS
GTASSGLPGSLGGVSSTTTNSGVGAIGSSSIAVGGPTFSQGGMLGTASIVGSVGSGILGL
GLGSGQSGVQGSSLGPQSPIGSLAPGSGIGVIGSNSGSSGSAGSGVGGGSSSLSGRPPSR
QKQNGSTSHSAVVADSTTDSALNSATQSQSSQSSSLTSTANQLKDTGPSLLGSMGLSSTS
PSPASYSEAKTTSGGSLQNGPLSYSQPPESIKPQEPLSRSMAERAAPSSGIEGDVSSLHL
TSDIFPSSTTTPSGAPSAPQSSLSEVSILPSLGVCPLGPVPLSKDQLYQQAMQEAAWTHM
PHPSDSERIRQYLMRNPCPTPPFHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQY
LAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEYEQGTYIYFDYEKWGQRKKEGFTFEYR
YLEDRDLQ
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggggaaatagatcgatgtctgaaaaaagtagcggaa
ggagtggagcagtttgaagacatttggcaaaagcttcacaatgcagccaatacaaaccag
aaggagaaatatgaagcggacctcaagaaagagattaaaaagctgcagcgccttcgagac
cagattaagacgtgggtggcatccaacgagatcaaagacaaaaggcagctaatagagaac
cggaaactcatagaaacgcaaatggagcgctttaaaatagttgaaagagaaaccaagaca
aaagcgtactcaaaagaaggactcggccttatccagaaggtggacccggcgcagaaggag
aaggaagaggtcggcacctggctaacgaacacgatagacacgttgaacatgcaggtggac
cagttcgagagtgaagtggagtctctttcagtccagacgagaaaaaagaaaggagacaag
gagaagcaggaccggatcgaggagctgaaaaagtttatcgagaagcatcggtatcacatc
cgaatgctggagacgatactgaggatgctggacaatgactcgctgcaggtcgaatccatc
aggaagatcaaggatgatgttgagtactacagagagtcatcgcaggacccagattttgag
gagaacgattatatatatgacgatctcgacctggatgaattccctcaaccattacttgcc
acctccccaccaggaccctcacacttggaggacgagatcttccagaactccagcagcaca
ccgacctccaccacctcatcctcaccaatccctccttcgcctgccacttgcactacggag
aactcagaagatgacaagaagaggggacgttcgacggacagtgaagtcagtcagtcaccg
gtgaagaatggaaatccctcctcgtcattatcttcttcctcctcttcctcctcttcgtct
tcttccgcctcggggctcacctcatcctctctggtttctgttgcgggcggaggcatcggc
ggctctggaagcagtcatcttagtgcagtggggggtcctttttccaacactttagccagc
agctacagcaacgccacgcagcagccgcctcacccgtcggtgcagcagcagcagcaggcc
aaaaactcgccgagctcttcggctcccatcaactccagcacctccaccaacagccacaac
gcctcgttggcgtcctcgccacccagcacacaggggctcctgacttcgaactccctgccc
caggcgccttcaggtcccacggcgacctccaacagccttggcctcagtctggggccctct
ctggggaaaagctccatctccaccagccccggcctgtcagggatgccggcgtccctaagc
aatatggtgggtcttctctcaagctccaccccaactccctacgctcaggcggccgcctcg
ggcacggccagctcagggttaccgggctctctcggcggcgtcagcagcacaacgaccaac
agcggggtgggcgccatcggtagcagcagcatcgcggtcggcgggccgacattctcgcag
ggaggcatgctcggcacggcttctatagtggggagtgtcggctcggggattctgggtttg
ggtttgggttcaggtcaatcgggagtgcagggatcttccctggggccgcagagccccatc
gggagcttagctcctggaagcggaataggagttatcggaagcaacagcggcagctcagga
tccgcagggagcggagttggaggaggaagctcatccctgtccggtcgaccgccgagcaga
cagaagcagaatggtagcaccagtcacagtgctgtggtagcagatagcacaacagactcc
gccctcaacagtgccacccaatcacaaagcagccaatcctcatctctgacctccacagcc
aatcagcttaaggacactggtcccagtttacttggctccatgggtttgtcgtccacctct
ccatcgccggcgtcctacagtgaggctaaaacaacaagcggtggaagccttcagaacggg
ccgctgtcctactcacaaccacccgaaagcatcaagccccaggagcctctgagcaggtcc
atggccgagcgagcagcgcccagctcagggattgagggagatgtatcctccctgcacctt
acttcagacatcttcccaagcagcactacgaccccctcgggggccccgtcagcacctcag
tcctccctgtcagaggtcagcatcctcccgtcactgggcgtctgtccactggggccagtt
cccctttccaaagaccagctctaccaacaggccatgcaggaggcggcgtggacacacatg
ccccacccgtccgactcagagagaatcaggcagtaccttatgaggaacccctgccccacc
ccacctttccaccaccagatgccaccacctcattccgacactgtagagttttaccagagg
ctttccacggaaacgttgttcttcatcttttactacctggagggcacgaaggcccagtat
ctggcagccaaggccctaaagaagcagtcatggaggttccacacaaagtacatgatgtgg
tttcagaggcacgaagagcccaagaccatcactgatgagtatgagcagggaacatacatt
tatttcgactatgagaagtggggccagcggaaaaaagaggggttcacctttgagtaccgg
tacctagaagaccgagacctccagtga
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