Xiphophorus hellerii (green swordtail): 116731528
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Entry
116731528 CDS
T07363
Symbol
prdm11
Name
(RefSeq) LOW QUALITY PROTEIN: PR domain-containing protein 11
KO
K24644
PR domain zinc finger protein 11 [EC:2.1.1.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xhe03000
]
116731528 (prdm11)
Transcription factors [BR:
xhe03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
116731528 (prdm11)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
Zn_ribbon_PRDM4
Dimer_Tnp_hAT
DUF7822
WD40_alt
DUF6448
Motif
Other DBs
NCBI-GeneID:
116731528
NCBI-ProteinID:
XP_032437226
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All DBs
Position
2:5160704..5169345
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AA seq
1037 aa
AA seq
DB search
MTQQPSDSWFCEDCRTYFQEECPSHGPPLFVPDTPVAPGPANRAALTVPSGLEVVTEXEG
QVDIRCVDAIFPKGALFGPYQGELVSKEEPASSFSWIIVGLNNSSQSIDGGDETKANWMR
FVRTSVRGQRQEPDGLPAQAETSTSESAGGWRPERSSGFGTAATTSRNFSASLKTASIAT
WTQVLRQSTVPQSLHKELPAPKLCTGKQSCEETDGQPPAKKKKIDLIFKDVIEASLEDCT
KPRSGSSPSVPNLKVEKGEDNLTSGEPSTSFCPNCVKLKRRILELEEELSHLRKQQGNSV
GPSSSELQPDPPHPEQGPIEDSQGMEPLTPTQMVLDEDDQEVDSADESVSADLVISPEDS
SKPYSGSSRRIRRFKQEWLKKFWFLRYSPTLNEMWCHVCRQYTVQSSRTSAFIIGSKQFK
IHTIKLHSQSNLHKKCLQLYKLRMHPEKTEEMCKNMTILFNAAYHLALEGRAFSDLRPLA
ELLKKCELKIVDQYMNEGDCQILVHHIARALKEELAEKMRLSPFLSVIMDAQNDDLYSDL
VAVYVQFTTSDSSPQMEFLSLERVSMPNVDGYLQLLDRAFSVLGLRFQDLLVVGLGVDGT
NISSGIRGSLYISVQKTFPWILCLPILIHRPHLEVLDAISGKELSCLEDLENNLKQLLSF
YRYSPRMMAELRSTAPTLSEETEFLGDIRAVRWIIGEPNVLNALIKDYLEVLAHLKEISN
QTQRDDAAAIALTLLQFLMDYQSVKLIYFLLDIIAVLSRLALTFQGEHLLVSQVEARLEE
AIQEIGQLVDCPGEYLQEFEENFRESFNGVALKNLRVAESKFQSIRKKICSRSQGILSQR
LDLQSRSFTKACKVLDLNSWPGNREDLKTFGEEEIQIIFNHLDSIPSAGQDGRTENRSNL
LVEWKELKVDYFSMNSFKDILIHICRYKQRFPLLNQILQVVRVLPSSTACCDKGRGALQR
ICKNNRSRLTLEQMNDLLTMAVNGPPVANFDAKRALDSWFEEKSGSSYSLSAEVLNRMSD
VDPKSGLHSGDINAEYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgacccaacagccatcggactcctggttctgcgaggactgtcggacgtatttccaggag
gagtgtccgtcccacgggccgccgctcttcgtccccgatacgccagtggcccctggaccg
gccaacagggcggctctcacggtcccatcaggcctggaggtcgtcactgagnnggagggc
caggtagatattcgctgcgtggatgcaatcttcccaaagggggcgctgtttggtccgtac
cagggtgagctggtatccaaggaggaaccagccagctccttctcctggattattgtcggt
ttgaacaattcgtctcagtccatcgatggcggcgatgagaccaaagccaactggatgagg
tttgttcgtacctcagtcagaggacagcgacaggaacctgacggccttccagcacaagcg
gaaacatctacttcagagtctgcaggaggctggaggccggagagaagctcagggtttggt
acagcggcgactacatccagaaacttcagtgcgtctctcaagacagcatcaatcgcaacc
tggacacaggtcctgagacagtcaacagtcccccaaagtctccataaggagcttccagct
cctaaactgtgcaccggcaagcagtcctgtgaagaaacagacggtcagcctcctgccaag
aagaagaagattgatctgattttcaaagacgttatagaagcttctctggaggactgcact
aagcccaggtctggatccagtcccagtgttcccaacttaaaggtggagaagggtgaggat
aacctgaccagcggagaaccctccacctccttctgccccaactgcgtcaaactgaagagg
aggattctggagctggaggaggagctgtctcatctcagaaagcagcaggggaactcggtt
ggtccatcaagttctgaacttcaaccggatccaccgcatcccgaacagggtcccatcgag
gactctcaaggtatggaacccttgacgcccactcagatggtactggatgaagatgaccag
gaagtggactcggctgatgagtcggtttcagccgaccttgtgatttccccagaggactca
tcaaagccttactctggatcaagcagacgaattcgccgcttcaagcaggagtggctgaag
aagttctggtttcttcggtactcaccgacccttaatgaaatgtggtgccatgtctgccgc
cagtacaccgtccagtcgtctcgaacgtcagccttcatcatcggctccaagcaattcaag
atccacaccatcaagctgcacagccagagcaacctccacaagaagtgtctgcagctctac
aagctgcggatgcatcctgagaagacggaggagatgtgcaagaacatgacgattctgttc
aacgcggcgtaccacctggctctcgagggacgggccttttccgacctacgtcctctggct
gaactactgaagaagtgcgaactcaaaattgtagatcagtacatgaatgagggtgactgt
cagattttggtccaccacatcgctcgagctctgaaggaagaattggctgagaagatgcgt
ctgtctcctttcctgagcgtcattatggatgctcaaaatgacgacctttactcagatttg
gtggcagtttatgtccagttcacaaccagtgacagttccccacaaatggagttcctgtcc
ttagagagagtgagcatgccgaacgtggatggatacctccagcttctggatcgggccttc
agcgtcttgggactcagatttcaggacttgctggttgtaggtcttggagtggatggcacc
aacatctcctcagggattagaggaagcctttacatatctgtccaaaagacttttccttgg
atcctctgtcttcccatattgatccaccggcctcatctggaggtactggacgccatcagt
gggaaggagctctcctgtcttgaggatctggaaaacaacctgaagcagctcctcagtttc
taccgctactctccacgcatgatggccgagctgcgatccaccgctccgactctgtccgag
gagacggagttcctgggtgacatcagagccgttcgatggatcataggagaaccaaacgtc
ctgaatgcactcatcaaggattacctggaggttttggcacacctgaaggagatcagcaac
caaacacagcgggatgacgctgcagctatagccctcacactcctccagttcctcatggac
tatcagtctgtgaaactcatctacttcttgctggacatcatagctgttctctcgcgactg
gccctcaccttccagggggaacacctgctggtgtcgcaggtggaagccaggctagaggag
gcgattcaggaaattggccagttggtggattgtcctggtgaatatctgcaggagtttgag
gaaaacttcagggaaagcttcaatggtgtcgctttgaagaaccttcgtgttgcagagtcc
aagtttcagtccatccggaaaaagatctgcagcagaagtcaggggatcctgtcacagagg
ctggacctgcagagccgctccttcaccaaagcctgcaaggtgctggacctgaacagctgg
cccggcaaccgtgaagacctgaagacgttcggtgaggaggaaatccagatcatattcaac
cacctggactccattccttctgcaggtcaggacggccggacggagaacaggagcaacctg
ctggtggaatggaaggagctgaaggtggactacttcagcatgaacagcttcaaagacatt
ctgattcacatctgcaggtacaagcagcgtttcccgctgctgaaccagattttgcaggtc
gtcagggtcctgcccagctcaacggcctgctgcgataaaggtagaggcgctctgcagagg
atttgtaagaacaaccgttcccggctgaccctggagcagatgaacgacctgctcaccatg
gccgtcaacggaccgcccgtcgcaaactttgacgcaaagcgagcgttggacagctggttt
gaggagaagtctgggagcagctactctctttcggccgaggtgttgaacaggatgtcggat
gttgatccaaagtcaggcctgcacagcggtgacatcaatgcagaatatctgtag
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