Xiphophorus hellerii (green swordtail): 116731701
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Entry
116731701 CDS
T07363
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116731701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116731701
03036 Chromosome and associated proteins [BR:
xhe03036
]
116731701
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116731701
Coactivators
SAGA/TFTC/STAGA complex
116731701
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
116731701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
116731701
NCBI-ProteinID:
XP_032437408
LinkDB
All DBs
Position
2:5435455..5451039
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AA seq
918 aa
AA seq
DB search
MAGAPDPLEDMLSTEVDEKAVSDLVGSLESQLGDRNLPAASDPDGKRDVAAVGRLSGKAG
SSEPQQGHQTAGSTREPGANQPLSGQTVPSSVTAGAIRNTGTGLQATGAPSLTALPVPVT
LSSQPAASFPRAAVLAPSPVETIRTSSPSLQPLNGSTGAGKVEGSPVAPPPGATLASQPG
LPAPQSPAGSPAVTLQGLPSPVISTAQNGLDPKGSASLSAAQVLNHNNPLMHTKMLVTST
PAPPAAQASIIQTQTASSTPLAAAKPAINGVAQTGVRPPGAAVGAAASIQPQRPQLVTAT
TRPAAPQTALAVRPQQQTTIQLPPGFTIPPGMVLVRTETGQLVLVPQQALAQAQAKLQQS
QTVVTQRPATPMATSTIRVSTATTAPGAPQAVRLAAPAPTRIVQSPSTTSVQPLTVPAAG
AVKMPPQKTSTVITAGVTPTAKPTTLPGGGATPPPAAPPGARVTVVSQEMQENVKKCKNF
LSTLIKLASHNSPSPDTSKNVKTLVQDLLDAKIEPEEFTSRLQAELKSSPQPYLIPFLKK
SLPALRQTLLNSQQSLTTAPPTTSAPPPVAPGSLTAAAIRPRLPVNATGTTVRLTPPITN
TAVGRPTVQTIQTRSPVVLSQQIRHPATLLRGPTTMAGKAPVHLASQANQKKPTDPGGGT
FRDDDDINDVASMAGVNLNEENARILATSSELVGTKIRSCKDESFLPPGLLHRRILDSAK
KLGVTEVPLEVVNLISHATESRLRSLLEKASVIAQHRTDGAKDEGNLTYEQSSDVRSQLR
FFEALERMEKQRKDEQEREMLLKAAKSRARQEDPEQARLKQKAKEMQQQELAQMRQRDAN
LTALAAIGPRKKRKLDSGGGASASSEVTSGSGSGSSASSSRQQLRQRITRVNLRDFILCL
EQDRSTARSLMLYKALLK
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcccccgacccgctggaggacatgctgtccaccgaggtggacgagaaggcg
gtcagcgacctggtgggctccctggagtcccagctgggggacagaaacctccccgcggct
tctgatccggacgggaagcgggacgtggcggcggtcggtcgcctctcagggaaagcgggg
tcttcggagcctcaacaagggcaccaaaccgcggggtcgacccgggaaccgggcgccaac
cagcctctgtccgggcaaaccgttccctcctctgttaccgccggggcaataagaaacacc
ggaaccggtttgcaagcgacaggagcgccctctttgaccgctttacccgtaccggtaact
ctgagcagccagcccgctgctagcttcccccgggctgctgtcctggctcccagcccggtg
gagacgatccggacctcttcccccagcttacagcccctgaacggcagcaccggagccggg
aaagtggagggctcacccgttgcccctccacccggcgcgaccttggcttcacaacccgga
ctccctgcccctcaatccccggcgggctcccctgctgtgaccctacaggggctccccagc
cccgtgatcagcaccgcccagaacggtttggacccgaagggttcagcctccctatcagcc
gctcaggtcctgaaccacaacaaccctctaatgcacaccaagatgctggtgaccagcacc
ccggctcctcctgcagcccaggcctccatcatccagacccagaccgcatccagcacaccc
ctcgcagctgccaagcctgccatcaacggggtggctcagaccggggtgaggccgcccggt
gctgctgttggggcagccgcctccatccagccgcaaagaccccagctggtgaccgccaca
acccggccggctgccccgcagaccgccctggctgtccggcctcagcagcagacaaccatc
cagctgccgcccggcttcaccatccctccaggtatggttctggtccggaccgagacgggt
cagctggtcttggttcctcagcaggctctggcccaggctcaggccaagctgcagcagagt
cagacggtggtcacccagagacccgcaacaccgatggcaacatcgactatccgggtcagc
accgccaccacggcgcctggagccccccaggcggtccggctggctgcacccgctcccacc
agaatagtccagtctccttccaccacctctgttcagcccctcacagttcctgctgccgga
gccgtgaagatgccgcctcagaaaacctccacggtaatcacggcgggggtgacgcccacc
gccaagcccacaacgctacctggcggcggcgccacgccccctcccgctgccccgcctggc
gccagggtcactgtggtgtcgcaggaaatgcaggaaaacgtgaagaaatgcaagaacttc
ttgtccacgctcatcaagctggcgtcacataactccccatctcccgatacgtccaagaat
gtgaagaccctcgttcaggacctgcttgacgcaaagatcgaacccgaggagttcacgtct
cggctgcaggctgagctgaagtcctccccacagccctacctcatccctttcctcaagaaa
agcctccctgctctgcgtcagactctgctcaacagccagcagtctctgacgacggctccg
cccaccacctctgctccgcctcctgtcgcccccggctccctcaccgcagcagccatccgg
ccgcggctgcctgtcaacgccacgggaaccacggtccgcctgactccacccatcacaaac
acggctgtgggcagacctacagtccagaccatccagacccgttctcctgtggtcctcagt
cagcagatcagacatccagccacactcttacggggccccaccaccatggcaggtaaagct
cctgtccacctggcatctcaggccaatcagaagaaaccgactgaccccgggggcgggacc
ttcagagacgacgacgacatcaacgatgtggcttccatggccggggtcaaccttaacgag
gaaaacgcccgtatcctagcaaccagctcagagctcgtcggcaccaagattcggtcctgt
aaagacgaatcatttctgccgccgggccttctgcaccgccgcattctggactcagccaag
aagctgggcgtgacggaggtgcctctggaggttgtgaacctcatctcacacgccaccgaa
tccagactgcgctcgctgctggaaaaggcctctgtgatcgctcagcaccgcacggacggc
gcaaaggatgaaggaaacctgacctatgagcagtcgtcggacgttcgctcccagctgcgg
ttcttcgaggcgctggagcggatggagaagcagcggaaagacgagcaggagcgcgagatg
ctgctgaaggccgccaagagtcgggcccggcaggaggatccggagcaggcccggctgaag
cagaaggctaaagagatgcagcagcaggaactggctcagatgcgacagcgagacgccaac
ctcacggcgcttgccgccatcgggccgagaaagaaacgcaagttagactcaggaggcggc
gcttcagcaagcagcgaggtgacgtcgggatccggttccggctcctctgcctcctcatcc
cggcagcagctccggcagcggatcactcgggtcaacctcagggacttcatcctgtgtctg
gagcaggaccgcagcacggcccgctccctcatgctctacaaggccctcctgaagtga
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