KEGG   Xiphophorus hellerii (green swordtail): 116731723
Entry
116731723         CDS       T07363                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
xhe  Xiphophorus hellerii (green swordtail)
Pathway
xhe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xhe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116731723 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xhe03041]
    116731723 (snrnp40)
Spliceosome [BR:xhe03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    116731723 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    116731723 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_EIPR1 Beta-prop_SPT8 ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 Beta-prop_IFT140_2nd Beta-prop_Nup120_160 WDR54 Beta-prop_VPS8 WD40_like
Other DBs
NCBI-GeneID: 116731723
NCBI-ProteinID: XP_032437442
LinkDB
Position
13:17355627..17361112
AA seq 347 aa
MIEPLKRAGDMAVVPSAMKRPRMELVAAAQSQQLVSAGPPRTSSLQAPIMLMSGHEGEVY
CCKFHPNGATLTSSGFDRLILMWNVYGDCENFATLKGHSGAVMELHYNTDGSLLFSASTD
KTVGVWDSETGERIKRLKGHTSFVNTCYPARRGPQLVCTGSDDGTVKLWDIRKKGAIHTF
QNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKLIYNMHGHGDSVTGLSLSSEGSYL
LSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVVFHPEEPVVLSGSSDKRLYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgattgagcctttgaagagagccggcgacatggcggtggttccctccgccatgaaacgg
ccccggatggagctggtggcggcggctcagtcccagcagctcgtgtccgcgggccctcca
cggacctccagcctgcaggccccgatcatgttgatgtcgggccacgagggcgaggtctac
tgctgcaagtttcaccccaacggcgccacgctgacctcctcaggatttgacaggctcata
ttgatgtggaacgtctatggagactgtgaaaacttcgccaccctgaagggccacagtgga
gcagtgatggagctgcattacaacacagatggcagcttgttgttctcggcgagcacagac
aagactgtgggcgtgtgggacagcgagaccggtgagaggatcaagcgtctgaagggccac
acctcttttgttaacacctgctatccagctcgtcgggggccccagctggtgtgcactggc
agtgatgatgggacagtgaagctttgggacatccgcaaaaaaggggccatccacactttt
cagaacacctaccaggtgctggccgtgacgtttaatgacaccagtgatcagattctatct
ggaggcatcgacaatgacatcaaggtgtgggacctgcggcagaacaagctgatctacaac
atgcacggccacggtgactctgtgaccggactcagcctgagctccgagggatcgtacctc
ctgtcgaactccatggacaacacagtgcggatctgggacgtgcgaccgttcgcacccaag
gagagatgcgtgaagattttccagggtaacgtccacaacttcgagaagaacttgctgagg
tgctcctggtccactgacggcagtaagatcgcagcaggttcagctgacagatttgtgtac
atctgggacaccacgtccagacggatcctgtacaagctgccgggtcacgctggctctgtc
aatgaggtggtcttccacccagaggagcctgtcgtgctgtctggctccagtgataaacgt
ctgtacatgggagaaattcagtag

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