Xiphophorus hellerii (green swordtail): 116731737
Help
Entry
116731737 CDS
T07363
Symbol
trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116731737 (trim71)
04121 Ubiquitin system [BR:
xhe04121
]
116731737 (trim71)
Enzymes [BR:
xhe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116731737 (trim71)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116731737 (trim71)
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116731737 (trim71)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
ANCHR-like_BBOX
SGL
zf-RING_5
zf-C3HC4
Ig_GEX2_N
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Invasin_D3
Motif
Other DBs
NCBI-GeneID:
116731737
NCBI-ProteinID:
XP_032437461
LinkDB
All DBs
Position
13:complement(23112880..23154483)
Genome browser
AA seq
831 aa
AA seq
DB search
MASFPDSDLQTCPLCKELCGSSAPISSSSSTSSSSSHTSGSSNHATKRLHVLPCLHTFCR
QCLEGQRSPSDPLKLRCPTCDHKVSISEAGVDSLPSSNFLFSNLLDVVVSSEDQIQNKNG
HHHLGGLIGGSSGFHPSHGGLLHAQHMGEPQCSSCDEENPATSHCLDCQEYLCDNCVRAH
QRVRLTKDHFIERLGESLHLSRVNSNSSGTGQPGVSVSLAQSLQNNFALLSLFQDRMSFC
QHHDGEVFLFFCETCSVPICRECSVGRHMGHTFVYLQDAVQDCRAITIQLLADAQQGRQA
VQLSMEKVQAMAEQVEIKAKVVQTEVKALVLRHRKALEERECELLWKVEKIRQVKAKSLY
LQVEKLHQSLTKLDSTIAAVSQILDEGHHLDVLLARERMLTQIHELKTLRGLLQPQEDDR
FMFTPPDQALYIAIQSMGLISSSAFAPVTKAHGEGLKNVLRGKPASFTVIGYDHDGEPRL
SGGDPVSAMVMSVADGSPSAVEVTDHQNGSYTVSYLPKTEGEHLVSVLVCNQHIQGSPFK
VIVKSGRSYGSLGSQVSSFGCEGEGDGQLCRPWGISVDKEGYVVVADRSNNRIQIFKPCG
AFHHKFGSLGSRPGQFDRPAGVACDSQRRIIVADKDNHRVQVFTFEGQFLLKFGEKGTKN
GQFNYPWDVAVNSEGKILVSDTRNHRVQLFAPDGSFLNKYGFEGALWKHFDSPRGVAFNH
EDHLVVTDFNNHRLLVIRPDCQSARFLGSEGTGNGQFLRPQGVAVDQENRIIVADSRNHR
IQVFEPNGNFLCKFGTQGSGYGQMDRPSGVAVMPDGVIVVVDFGNNRILKF
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atggcttctttccccgattctgacctgcagacctgtccgctctgcaaggagctgtgcggc
tcctccgctcccatctcctccagctcttctacctcgtcctcctcttcgcacacctctggc
tcctctaaccacgccaccaagaggctccacgtcctaccctgcctgcacaccttctgcagg
cagtgtttggagggacagcgcagccccagcgacccgctgaagctgcgttgccccacctgc
gaccacaaggtctccatctctgaggccggagtggactccctgccttcctccaacttcctc
ttcagcaacctgttggacgtggtggtgagctcggaagatcagatccagaataagaacggt
caccatcacctcgggggcctgatcgggggctcgtccgggttccacccgtcacacgggggc
ctgctgcacgcgcagcacatgggggagcctcagtgcagctcctgcgacgaggagaacccg
gccacgtcccactgcctcgactgccaggagtacctctgtgacaactgcgtgcgagctcac
cagcgggtgcggctcaccaaagaccacttcatcgagcgcctgggggagagcctccacctg
agtcgggtcaactccaacagcagcggcacgggccagccgggggtgtccgtgtccctcgcc
cagtccttgcagaacaacttcgcgctgctgtccctgttccaggaccggatgagcttctgc
cagcaccatgacggcgaggtgttcctgttcttctgcgaaacctgctcggtgccgatctgc
agggagtgcagcgtgggccgtcacatgggccacaccttcgtctacctgcaggacgccgtg
caggactgcagggccatcaccatccagctgctggcggacgctcagcagggtcgacaggct
gtccagctaagcatggaaaaagtccaagccatggcggagcaggtggagatcaaggccaag
gtggtgcagaccgaagtgaaggctctcgttctgagacacaggaaagccctggaggagagg
gagtgtgagctcctgtggaaggtggagaagatccgtcaggtgaaggccaagtctctatac
ctgcaggtggagaaactccaccagagtctgaccaagctggatagtaccattgctgctgtg
agccagatactggatgagggccaccacctggacgtgctgctggccagggagagaatgctg
acccagatccatgaactcaagactctcagggggctgctgcagccgcaagaggacgaccgc
ttcatgttcacgcctccagaccaggctctgtacatcgccatccagtccatgggcctgatc
agcagcagcgcctttgcccccgtcaccaaagcccacggcgaaggtctgaaaaacgtattg
cgcgggaagcccgcgtccttcaccgtcatcggatacgatcacgacggcgagccgcgcttg
tccggcggcgacccggtgtcggcgatggtgatgtctgtcgcagacggctctccgtccgcg
gtggaggtgacggatcaccagaacggatcctacaccgtcagctacctgccgaaaacggag
ggggagcacctggtgtctgtgttggtgtgcaaccagcacatccagggcagccccttcaag
gtgatagtcaagtccggacggagctacgggtccctcggctcccaggtgtcgtctttcgga
tgtgagggggagggagacggccagctgtgtcgcccctggggcatcagcgtggacaaggaa
ggatatgtcgtggtggcggatcgcagcaacaaccgcatacagatcttcaagccttgcggt
gccttccaccataaattcggctccttgggttctcggcctggtcagtttgatcgtccagcc
ggggttgcctgtgacagtcagagacggatcattgtggctgataaggacaatcaccgtgtg
caggtgtttacgtttgagggccagttcctgctgaagtttggggaaaagggcaccaagaac
gggcagttcaactatccctgggatgtggccgtcaactctgagggtaaaatcttggtctcg
gacaccagaaaccaccgcgtgcagctctttgcccccgacggttccttcctcaacaagtac
ggcttcgaaggggctctgtggaaacactttgactcccccagaggggtcgcctttaaccac
gaagaccacctcgtcgtgaccgacttcaacaaccaccggctcctggtcatccggccggac
tgccagtcggctcgcttcttgggctcggagggcacggggaacgggcagtttctgcgcccc
cagggcgtcgccgtggaccaagagaaccgcatcatcgtggccgactcccgcaaccacagg
atccaagtgttcgagcccaacggaaactttttatgcaaatttggcactcaggggagtggc
tacggacagatggaccgcccctccggggtggccgtgatgcccgacggagtcatcgtggtc
gttgactttggaaacaaccgcatactcaagttctaa
DBGET
integrated database retrieval system
