Xiphophorus hellerii (green swordtail): 116732106
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Entry
116732106 CDS
T07363
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116732106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xhe03041
]
116732106
03009 Ribosome biogenesis [BR:
xhe03009
]
116732106
Enzymes [BR:
xhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116732106
Spliceosome [BR:
xhe03041
]
Complex A
U2 snRNP components
U2 related factors
116732106
Complex B
116732106
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
116732106
Ribosome biogenesis [BR:
xhe03009
]
Eukaryotic type
90S particles
Helicases
116732106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
AAA_29
SRP54
AAA_7
AAA_25
Motif
Other DBs
NCBI-GeneID:
116732106
NCBI-ProteinID:
XP_032437952
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All DBs
Position
14:complement(17114923..17148101)
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AA seq
729 aa
AA seq
DB search
MRRDRDGDRDRNLDRNCNRGRDVKSGDDPVASAAASWSFVNRPPVQQQINPFTNLPHTPR
YHEILKKRLQLPVWEYKDVFTEILMRNQSFVLVGETGSGKTTQIPQWCVDMVRSLQGPRR
AVACTQPRRVAAMSVAQRVSDEMDVMLGQEVGYSIRFEDCSSAKTVLKYMTDGMLLREAM
NDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQVYFDN
CPLLTIPGRTHPVEIFYTPQPERDYLEAAIRTVIQIHMCEEEEGDILLFLTGQEEIDEAC
KRIKREVDNLGPQVGDMKIIPLYSTLPPQQQQRIFEPPPPNNPNGAIGRKLVVSTNIAET
SLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYT
EKAYRTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYL
AALNDDGDLTELGSMMAEFPLDPQLAKMVIASCEFNCSNEILSITAMLSVPQCFVRPTEA
KKVADDAKMRFAHIDGDHMTLLNVYHAFKQNHESTQWCYDNFVNYRSLMSADNVRQQLSR
IMDRFNLPRNSADFNSRDYYLNIRQALVTGFFMQVAHLERTGHYLTAKDNQVVQLHPSTV
LDHKPEWVLYNEFVLTTKNYIRTCTDVKPEWLVKISPQYYEMSNFPQCEAKRQLEHIIAK
LSSKEYTQF
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgtgacagagacggtgatcgtgacaggaacctggatcggaactgtaacaggggc
cgagacgtgaagtcaggcgatgaccccgtcgcctcggctgcagccagttggagttttgtg
aaccgacctcccgttcagcagcagataaaccccttcaccaacctgccccacacaccacgc
taccatgagatcctaaagaagcggctgcagctcccagtctgggagtacaaagacgtcttt
acagaaatcctgatgcggaaccagtcgttcgtgctggtcggagagacgggctctggaaaa
accacgcagatcccacagtggtgtgtagacatggtgcgttcactgcaggggcctaggaga
gcggtggcctgcacccagcccaggagggtggcggcaatgagcgtcgcccagagggtgtca
gatgagatggatgtcatgctgggtcaagaggtgggctattccatcaggtttgaggactgc
agctctgccaaaactgtattaaagtacatgacagatggaatgttgctgcgggaggctatg
aacgatcccctgctggagcgctatggtgtcatcattctggacgaggcccacgaacgcaca
ttagccacagacatcctcatgggggttctcaaggaagtagtccgccagaggtctgacctc
aaggtcatcgtcatgagtgcgacgctggacgccgggaagttccaagtgtactttgacaac
tgcccgctgttaaccatccctggacgcacgcaccccgtggagattttttacacaccgcag
cccgagcgagactacctggaggcggccatccgcaccgtgatccagatccacatgtgcgag
gaagaagagggggacattctgctcttcctcactggacaggaggaaatcgacgaagcctgc
aagcgaatcaagcgtgaggtcgacaacctggggccccaagtcggcgatatgaaaatcatc
cccctgtactccaccctaccaccgcagcagcagcagagaatctttgagccgcctccacca
aataacccaaacggcgctattggaagaaagctcgttgtgtcaacaaacatcgccgagacg
tccctgaccatcgacggagtggtgtttgtaattgatcccggatttgccaagcaaaaggtg
tacaacccacgcatcagagtggaatcccttttggtcacagccatcagcaaggcctcggct
cagcagagagcgggtcgcgctggacgaactcgcccaggaaaatgtttccgcttgtacaca
gagaaagcttacaggacagaaatgcaggacaacacatatccagagatcctgaggtctaat
cttggctccgtggtgctgcagctgaagaaactgggcattgatgatcttgtgcactttgac
ttcatggaccctccagccccggagaccctgatgcgagcgctagagctgctgaactacctg
gcagcgctcaacgacgacggtgacctgaccgagctgggctccatgatggcggagttcccc
ctggacccacagctcgccaagatggtcatcgccagctgcgaattcaactgttccaatgag
atcctttccatcaccgccatgctgtcagtcccacagtgcttcgttcgacccacggaggcc
aaaaaggtggctgatgatgccaagatgcgctttgcccacatcgacggagaccacatgacg
ttactcaacgtttaccacgcctttaagcagaaccacgagtccacccagtggtgctacgat
aactttgtaaactaccgctcgctgatgtcagcagacaacgttcggcagcagctgtcaagg
atcatggatcgcttcaacctgccaagaaacagcgccgatttcaacagcagagactattat
ctcaacatccgacaagcactggtcactggctttttcatgcaggttgctcaccttgagcgc
accggccattacctgacggcaaaggacaaccaggtggtgcagctgcacccctccactgtg
ctggaccacaaacctgagtgggtgctctataacgagttcgtcctcaccaccaaaaactac
atccgtacgtgcacggacgtcaagccggagtggctggtgaaaatttccccgcagtactac
gagatgagtaacttccctcagtgtgaagcaaaaagacagttggagcacattattgcaaaa
ctctcatccaaggaatacactcagttctaa
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