Xiphophorus hellerii (green swordtail): 116732124
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Entry
116732124 CDS
T07363
Symbol
hps5
Name
(RefSeq) Hermansky-Pudlak syndrome 5 protein
KO
K20191
Hermansky-Pudlak syndrome 5 protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116732124 (hps5)
Membrane trafficking [BR:
xhe04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
116732124 (hps5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_HPS5
TPR_HPS5
PEP5_VPS11_N
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_RIG_2nd
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR36-Utp21_1st
Beta-prop_Vps41
Beta-prop_RIG_1st
ANAPC4_WD40
TolA_bind_tri
Beta-prop_IFT140_2nd
Beta-prop_WDR3_1st
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
116732124
NCBI-ProteinID:
XP_032438000
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All DBs
Position
2:7638195..7652872
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AA seq
1112 aa
AA seq
DB search
MPAIPVVPENHNHLLAEFDCLDPLLSALRFDSGRLKCTCLAVSRKWLALGTSAGGLHLIQ
KEGWKQRLILTHKEGSITQVACCPHDEDFIAVATSQGLVVVWELQLERRGRPERVSVSSE
HRGQNITALCWDTSTLRVFVGDSVGKVSCLRAGSSKLGKGSAFVIFPVQTVTTVDSRVVQ
LGYQDGRLLVSSLSRCYLCDTEKEKFWRVGNKERDGEYGACFLPQNRGLLVGQPPLLYCA
RPGSRIWEANFNGEVLSTHQFKKLLACPPVPLITYRNEPNYNPAQSSPQSLGFPKLLYFG
DQNLLTWTDSAIYIFTPQNGQVLLWTEVKDLADIAVHRNELFCLHSSGHLSHLSLLSAER
CVERLLRRESWTLAAAVCCMFQHTITTSRARKSIPIDRLEYLKSQLSSSAQTELINQLEE
VILKLEPLDSASSSRRSSISSHESFNVLDCGIYRVISRRGSQSDEETSSLMNQSVSEEER
LKEFSFVQEEDQVDHDPQSAERLEADRPDQGLQFHLPLSFCTKPPRIALQAVKDSVSSFV
KKTTEKINTLQMNSELRHRPEFKESAQPETLASTTSYSDEMEIEVYNEISNAEADMDELR
SATEQAVSQIQDPLVLLDPVCLREALMEWLPVLERILGPAVLLTASVTNSNLDGSGEDKW
DREYLSICTEQQRESSESVTEEAELGEKEVLCEKQPMVDTTENVAALENHPEPIRVASPT
PLPSDLEANLSELATLYTELSCFRNQQEVPESTTFLRRYFFLLDQERVRRMCLLCHQQRP
EMMSSFSEAMLVLTQSSKVVEIIQRGDLLKSLRSLRELQPWGAPHLLAHFHRLYEKHGEA
AVRSFSQFYPIITPADVETVAQRSHFLAYLDNLVHSRAEEHRLSFLQSLLEPESLRQDWL
ELVLTHDAPQHADTLTSDGRPRWRSHCFTWGYGRLLSLLIRLPADISSKEKMNEMCRSHG
YWTGYLYLCKELQRRTEAFSTICQLDDLSLLEDPDGVEPHNLDEWKLLIQLSQQYCRVAD
PQLATDVNGSSWSNGSTNCEGRINPESLTLLLARTLGPDRALELLHECGVQMVLSAHSQL
VCDLLRVAERRQRSMIQTMLERSDRFLWSQHA
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcgataccagttgtgcctgagaaccacaatcacctcctggcagagtttgactgc
ctcgatccgctcctctctgctctacgttttgactcaggcaggctcaagtgtacctgtctg
gcggtgtccaggaagtggctcgcattgggaacgtcagcaggagggttgcacctcatccag
aaggagggctggaaacaaagactgattctgactcacaaggagggatctatcacacaagtg
gcatgttgtcctcatgatgaagattttattgcagttgcaacaagtcagggtctggtggtg
gtgtgggagctgcagctggagcggcgaggtcgtccagagcgcgtcagcgtgtcatcagag
cacagaggacagaacatcaccgccctttgctgggatacaagcacacttagggtttttgtt
ggggactctgtaggcaaagtgtcgtgtctgcgggctggatcatctaaactgggcaagggg
tcagcatttgtcatctttcctgtccaaactgttactactgttgactccagagtggttcag
cttggatatcaagatgggcgcctcctagtgtcttcactcagtcgctgctacctctgtgac
acagagaaggagaaattctggcgtgttggaaataaggagcgtgacggggaatacggagcc
tgcttcttgccccagaataggggattattagtgggacagccgccgctgctgtactgcgcc
cggccgggatcccgaatatgggaggctaattttaacggcgaggttctgagtactcatcaa
ttcaaaaagctgctcgcctgcccaccagtccctttaatcacttacagaaatgagccaaat
tacaatccagcacagagtagtccgcagtctctcggcttccctaaactgctttattttgga
gatcaaaatctgcttacttggaccgattcggccatttatatcttcacacctcagaatgga
caggtcctgctgtggactgaagttaaagacttggctgacattgcagtccaccgcaacgag
ctgttctgcctccacagcagcggccatctgtcccacctgtctttgctgtctgcggagcgc
tgcgtggaacgtctgctgcgcagagagtcctggactctcgctgctgccgtctgctgcatg
ttccagcacacaatcacgacgagccgggccaggaagtccattcccatcgatcgcctggaa
tacctgaagtctcagctcagttccagcgcgcagacggagctgattaaccagctggaggaa
gtgatcctgaagctggaaccgctggattctgcatccagcagccgcaggagcagcatctct
tcacatgagagttttaacgtcctcgactgtgggatctaccgtgtgatcagccgcagagga
agccagtcggacgaggagaccagctccctcatgaatcagtccgtgtcagaggaggagcga
ctgaaagagttcagctttgtccaggaggaagaccaggtggatcatgatccacagagcgct
gagcggctggaggccgatcgacctgaccaaggcctgcagttccacctcccactttcattc
tgcaccaaacccccccgcatagctttgcaggccgttaaagacagcgtttctagttttgtc
aagaagacgacagagaagatcaacaccctccagatgaactctgaactccgacatcggcct
gaatttaaagagagcgcacagcccgaaacgttagccagcacaacatcctactcagatgaa
atggagattgaagtttataacgaaatatcaaacgcagaggctgatatggatgaacttcgt
tcagcaacagagcaagctgtctcacagatacaagatcctttggtgctcctggatccagtc
tgccttagagaagctctgatggagtggctccctgtgttggagcgaattctgggccctgct
gttctcctgacagcttctgtaaccaattccaacctggatggatcaggagaagataaatgg
gacagggaatatttgagcatatgcacagagcaacaaagagaatcatcagaaagtgttaca
gaggaagcagaacttggagaaaaagaagtcctctgtgagaaacagccgatggtcgacacg
actgaaaacgtcgctgctctggagaatcatcctgagcccatccgagtggcgtctcctacg
cctttaccatcagatctggaagctaatctcagcgagctggccactctttacacagagctc
agctgcttcaggaaccagcaggaggtgccggaaagcacaactttcctgcgtcgctacttc
ttccttctggaccaggagcgagtgagaagaatgtgccttctttgtcatcagcagcgaccc
gagatgatgagctcgttctctgaggccatgctagtgctcactcagtccagcaaggtggtt
gaaattattcagagaggagatttgctgaaatctctacgaagcctcagagagctgcagcct
tggggtgcaccgcatctccttgctcacttccacaggctatatgagaagcatggtgaggca
gctgtacgctcgttttcccagttctatcccattataacacctgctgacgtggagacggtg
gctcagcgaagccacttcctggcgtacctggataatcttgtacattcaagagctgaggag
cacaggttgtcatttcttcagtcgctccttgaacctgaatcattgagacaggattggctg
gagctggtcctgactcacgatgcccctcaacacgccgataccctgacctctgatggaagg
cccaggtggcgttcacactgtttcacctggggctacggacgtcttttgtctttgctcatt
cgtcttcctgcagacatttcatctaaagagaagatgaatgagatgtgccgcagtcacggc
tattggacgggttacctctacctctgcaaagagctgcaacgtcgcactgaagcattttcc
accatctgtcagctggatgacctcagcctcctggaggatcctgatggtgttgaacctcat
aacctggacgagtggaagctgctgatccagctctctcagcagtattgccgtgtggcagac
ccacagctggccacagatgtgaatgggagcagctggtccaacggctccacgaactgcgaa
ggacggatcaacccggagagtctgaccctcctgctggctcggaccctggggcctgaccga
gccctggagctgctgcatgaatgtggagtgcagatggtcctttcagcccactcccagctg
gtgtgtgacctgctgagagtcgccgagaggaggcaaaggtcgatgattcagaccatgctg
gagcgcagtgatcggttcctctggtctcagcatgcctaa
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