Xiphophorus hellerii (green swordtail): 116732426
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Entry
116732426 CDS
T07363
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04382
Cornified envelope formation
xhe04510
Focal adhesion
xhe04512
ECM-receptor interaction
xhe04518
Integrin signaling
xhe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116732426 (col4a6)
04518 Integrin signaling
116732426 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116732426 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116732426 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116732426 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xhe04147
]
116732426 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
xhe00536
]
116732426 (col4a6)
Exosome [BR:
xhe04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116732426 (col4a6)
Glycosaminoglycan binding proteins [BR:
xhe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116732426 (col4a6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116732426
NCBI-ProteinID:
XP_032438463
LinkDB
All DBs
Position
14:9000082..9124339
Genome browser
AA seq
1716 aa
AA seq
DB search
MKFLICVLTVSCVLRSTHGGGKSDEPCAGLDCSRGCKCFPEKGSRGRPGQMGEIGRPGPD
GPRGGLGPRGPKGEKGHIGLKGPSGDKGDKGPMGVPGFRGTDGVPGHPGQQGSRGPPGKD
GCNGTTGDPGLPGYGTGAPGFPGFQGPTGPKGQKGDPTYSSDNTEGEPGELGPRGPSGPR
GPTGPPGSQGPRGIDGFPGFAGPPGPQGLEGSRGDIYRGGKGDKGDVGLPGEPGQPLINV
IVEFVGFPKGDKGLQGDPGPKGIKGYPGLPGPRGPFGYRGEDGEQGILGYPGPRGPTGFI
GPPGPSGLQGMPGQQGFPGQPGFLGPKGDQGDTGLPGPPSYSNDIGSFVQGPSGDPGFPG
RPGVTGDQGPSGITGPPGPPGSFRIGRPGPPGFPGGTGPKGDKGNPGEPIYSFEGSQGPP
GPDGPPGRPGPPGLPGPPGPQDNSGRPRDPCDRYPPDRPTDTTERGRPGLPGPPGQTGYP
GNSGVKGFRGDLGDCNCGGGGGRGRVGLPGLPGPQGPRGNFGLQGPKGEPGNRGSPGFNG
GPGAPGRVGERGLIGRKGQKGESPFFPSFGVKGDRGASGPRGPTGETGNPGRDGLSGFPG
PPGPPGVGGVGTIGEKGFPGFSGAKGRYGAPGDPGFGYPGIPGSRGEKGEPGFPGFPGQP
GSPGLKGDNRCGGVIDAGEGTGDSQPCVTYGEPGEKGYPGSSGRPGPQGPPGFPGSFGRR
GSVGPKGEKGDPGFGGQPGPQGFPGPRGDPGVPGTPGVDYDGPKGKDGLPGLPGPKGQPG
EVLGARPGDPGVAGIPGANGDKGQPGSPGTPGSPGFDGRPGVSGLKGERGVDGRPGIPGL
PGLPGGSTNPLPGPPGFPGSKGLIGPLGCPGNPGRKGEPGDRGFPGPAGMKGTPGFPGEN
GGTGPRGPPGLPGPGTIPGRPGTPGRKGERGFSGLTGFPGRPGRPGNPGFPGEKGFPGDR
GRDGFPGGPGRFGLKGDGGNPGRPGLPGSAPILQKGPAGGVGAPGYQGFPGPRGDKGLPG
LPGRPGSPGRPGFPVDSKGQAGQPGFPGRPGQPGFPGTKGEGGIMGFPGVTGERGEDGSP
GFPGSPGGFGRPGAKGPPGETFAYPGAPGVKGQPGDSGFPGPRGIDGSLGDSGFPGRRGS
DGQKGSPGVTGRPGTMGPPGFQGPRGQPGFPGRQGPDGSPGLPGGPGGLGFKGLSGAPGL
DGLNGLAGPKGPPGIPGMTIGGNPGLRGAPGQKGERGVSFPGQPGFPGSKGLRGDSGTVG
APGFPGLPGPPGPSTSSNFPGPVGDPGLPGLDGEYGFQGPPGPPGPPGPGTAQGDTGDPG
LPGFPGIPGLKGEAGNPGGPGYPGFSGLKGAPGDNGLSGAPGLKGLPGEPGFYGFKGRPG
SPGRPGRKGPPAFSVPYVPVSGPPGEVGNPGYTGRPGGPGEPGQPGLNGRPGVKGRPGAA
GELGRTGPPGFPGPVGDPGFPGSQGITGDQGFPGAIGRPGIPGGVGRSIGVGYTLVKHSQ
TTDVPMCPQGMAQLWEGYSLLYVEGQEKAHNQDLGQPGSCLPRFNTIPFLYCNPSETCYY
ASRNDKSFWLSTAAPIPMMPVAEEQIRPYISRCSVCEAPSQAVSVHSQDLTIPNCPPGWR
SLWIGYSFLMHTAAGAEGGGQSLMSPGSCLEDFRSTPFIECNGARGTCHYFASKYSFWLT
TVDPRLEFGAPTQQETLKGGQERFRVSRCQVCSKIL
NT seq
5151 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctgatctgtgtgctgactgtctcctgcgtgctgagatctacgcacggaggt
ggaaagtctgatgaaccgtgcgcaggcctggactgcagcagagggtgcaagtgcttccca
gagaaaggcagcaggggtcgtcctgggcagatgggtgagatcggacgacccggaccagat
gggccgcgcgggggcttagggcctagagggcctaaaggagagaagggccatattggactt
aaaggaccatctggggacaaaggagacaaaggaccaatgggagtgcccggatttcgagga
actgatggagtgcctggtcacccgggtcagcagggcagcaggggcccaccagggaaggac
ggctgtaacggaaccacgggggacccgggtctgcccggctacggcacgggcgcgccggga
tttcctgggtttcaagggccaacggggccaaaaggtcagaaaggagaccccacctacagc
tcagacaacacggagggggaaccaggtgaactaggacccaggggcccatctggtcccaga
ggtccgaccggcccgccgggttcccaaggtccaagaggaattgacggattccccggattc
gccggccctccggggccccaagggctagagggcagccgcggcgacatttatcgaggaggg
aaaggagacaagggcgacgtgggcttgcccggcgagcctggccagccgttgatcaatgtc
attgtggagtttgtgggttttcccaaaggagacaaaggactgcagggtgatcccggccca
aagggaataaaaggataccctggattacctggaccacgtggaccttttggttatagaggt
gaagacggggaacagggcattctcggatacccaggaccaagaggtcctacgggttttatc
ggaccgcctggcccttctggactgcaaggaatgccggggcaacaaggtttcccgggacaa
ccaggattcctgggacccaagggagaccaaggtgacaccggactcccaggacctccaagt
tactccaatgatattggatcttttgttcaaggaccctcaggtgacccaggttttcctggc
cgtccgggtgtcaccggtgatcagggaccttcaggaatcaccgggcctccaggaccgcca
ggctctttccgcattggtcgtccaggacctccgggttttcctggtggcaccgggccaaaa
ggagacaagggtaacccgggcgaaccaatttacagctttgagggttcccaaggtccccct
ggacctgatggtcctcctggtcgtcctggtcctcctggtctcccgggtcctccaggtcct
caagacaactcaggccggcccagggacccctgtgataggtatcctcctgacaggcccaca
gataccaccgaaagaggccgccctggactcccagggccgcctggccaaacgggatatcca
ggaaactcaggagttaaaggctttagaggtgacctcggtgactgtaactgtggaggagga
ggaggaagaggaagagtaggtctgcctgggttacctggacctcaaggacccagaggcaac
tttggcttgcaagggcctaaaggtgagcccggtaaccggggttctcctggtttcaacggc
ggtccaggggcgcctggtcgtgtgggtgagaggggattaattgggcgtaaaggacagaag
ggggaatcccccttcttccccagtttcggggtgaagggagaccgaggggcatctggaccc
agaggacctacaggtgaaacaggaaaccccggcagagacggtctgtctggcttccctgga
cccccaggacccccgggtgttggtggtgttggcacaatcggtgagaagggtttcccagga
ttttctggagccaaaggtcgctatggtgcccctggcgatcctggattcggctaccccggc
ataccgggctctcgaggtgaaaaaggagagcctgggttccctgggtttcctggacagcca
ggttcaccaggcctgaaaggtgacaaccgctgtggaggggttattgacgccggagaggga
acgggcgatagtcaaccttgcgtcacatatggtgaacctggagaaaaaggttatcctggc
agttctggacgaccaggcccccaaggtccgcccggcttcccgggatcctttggaaggcga
gggtctgttggccccaagggagagaagggagatcctggttttggaggccaaccaggacca
caaggtttccctggacccagaggagatcccggagttccaggtactccgggagttgactac
gatgggcccaaggggaaagacggccttccaggacttcctggacccaaaggccagcctgga
gaagtcctgggagcaagacctggagatccaggagtggctggcatacctggtgcaaacgga
gacaagggccagccagggagtccaggaacacccggatcacccggcttcgatggacggcct
ggtgtttccggtctgaagggagagcgtggagtggatggccggccgggtattccgggtctt
cccggacttccaggtggctcaaccaatcccctccccggtccacccggatttcccggcagc
aaaggactcatcggaccactaggctgcccaggtaatcccggtcgaaaaggtgagccagga
gatcgaggattcccgggccccgctggaatgaaaggaaccccgggattccctggtgaaaac
ggaggaacaggtccgaggggaccccctggactgccaggcccgggaaccattcctggaaga
cccggaacgccgggaagaaagggtgaaagaggattctcgggactgacgggtttccccgga
cgaccgggtcgtcccggaaatccaggatttcccggtgagaaagggtttcccggagaccgt
gggagagatgggtttcccggcggtcctggacggtttggactgaaaggtgacggaggaaac
ccaggccgccctggtcttccaggctccgctcctattttgcagaaaggcccagcagggggc
gtcggagcccccggctatcagggctttcctggacctagaggtgacaagggtctccctggc
ctgcctggtcgtccgggttctccgggacgtcccggtttccctgtggacagcaaaggccag
gccggacagccgggtttccccgggcggcccggccagccgggcttccctggaacaaagggg
gaaggaggaatcatgggattcccgggcgtgacgggagagaggggtgaagacgggtcgccg
ggattccctggaagtcctggaggattcggtcgacccggagcaaaaggtccacctggagag
acgtttgcctatcctggagcaccgggagtgaaaggccagcctggtgattcgggttttccg
ggccctcgaggcatcgacggttcccttggcgacagcggctttccaggacgccgaggttcc
gatggacaaaagggcagtcccggtgtaacggggcgtcccggaacgatgggtccacctggg
ttccaggggccgcggggtcagcccggattccctgggagacaaggaccagacgggtccccg
ggactgcccggaggtccaggtggcctcggttttaaaggtttgtctggagcgccggggctg
gacgggctcaatggcctcgccggtccaaaaggccctcctggaatcccaggtatgacgata
gggggtaacccaggcctccgcggtgcgccgggacagaaaggagagagaggcgtttccttc
cctggacaaccaggcttccctggatcaaaaggactgagaggagattcgggaactgttgga
gctccagggttccctggattacccggacctcctggtccgagtacttcatcaaacttcccg
gggcctgtgggagaccccggacttcctggattggatggagaatacggtttccagggccct
cccggtcctcctgggccaccgggtccgggcacagcacagggagacacaggagacccaggg
ctcccaggattccctggaatccccggcctgaagggagaagcaggaaatcccggaggcccc
ggataccccggcttctctggcttaaaaggagctccgggtgacaacggactaagcggtgct
ccgggtctgaaaggactgcccggcgagcccggattctacggattcaaagggcgtccagga
tcaccggggcgacctgggcgtaagggtcctcccgcattctcagtgccgtacgtaccggta
tctggacctcctggagaagttggtaaccccggctacaccggacgacccggtggtcccgga
gagcccggccagcctggtctcaacggacgtccaggtgtgaagggccgtcccggcgctgcg
ggtgagctcggcaggaccggaccgcccggttttcctgggccggttggggatccgggcttc
cctggttcccaagggatcactggagatcaaggttttcccggagccatcggtcgtcccggt
attcccggcggcgtcggccgcagcatcggcgtcggctacactctggtgaagcacagccag
accaccgatgttcccatgtgtccccaaggcatggcccaactgtgggaaggatacagcctg
ctgtacgtggagggacaggagaaggcacacaaccaagaccttggtcagccgggttcgtgc
ctccccaggttcaacaccatccccttcctctactgcaacccatctgagacctgctactac
gcgagccgcaacgacaaatccttctggctctccacggccgcgcccattcccatgatgcct
gtggccgaggagcagatccggccttacatcagcaggtgttcagtgtgcgaggctccgtct
caggcggtgtcggttcacagtcaggacctaaccatccctaactgcccacccggctggagg
agtctttggatcggatattccttcctcatgcacacagcagccggcgctgagggtggcggt
cagtccctgatgtctcccggctcttgcctggaagacttccgatctacccccttcatcgag
tgcaacggcgccaggggcacctgccactacttcgccagcaagtacagcttctggctcacc
acagtcgacccccggctggagttcggcgcgccgacacagcaggagaccctgaagggcgga
caggaacgcttcagggtcagccgctgccaagtctgcagcaagatcttgtag
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