Xiphophorus hellerii (green swordtail): 116732737
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Entry
116732737 CDS
T07363
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xhe00536
]
116732737 (col25a1)
Glycosaminoglycan binding proteins [BR:
xhe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116732737 (col25a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116732737
NCBI-ProteinID:
XP_032438988
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Position
14:19478051..19682951
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AA seq
679 aa
AA seq
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MEKEVKRHYRTAALNIISSLCSVASIAFCVHLSISAADIRSRVVGLESGTSERTFIQVRG
YSMEDFNSLVQQRVDELLSQRSYENFAKIRTARQASADCNCPPGPPGKRGRRGRDGEPGP
PGPPGPQGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGP
PGPRGPPGDTGKDGPRGLPGLAGDPGQPGEIGLMGLEGPQGPKGSLGSPGIPGTDGLKGD
VGIPGQDGIPGAKGEKGEQGEKGDMGEDGPKGDMGEKGDAGSSAAGIKGEPGEPGRSGQK
GEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGEKGDHGPAGKGDRGEIGPAGPKG
SQGESGMPGPKGSKGDIGDKGDLGSIGPRGPPGQKGDRGATEIIDYNGNIEEALQRITTI
TVTGPPGPPGPIGPPGFKGDRGLPGLPGLDGERGYKGSKGDMGMPGASGEKGSTGLTGLP
GVNGAKGDKGDPGLPGPQGPSITGPPGPPGPHGPSGPMGPHGFPGPKGEPGLHGLKGMRG
EPGHKGDRGHMGLPGASGLDGKPGIRGTDGPPGPAGPAGPKGDIGEKGASGEPGPRGPYG
LPGAAGTPGLDGLPGLKGDKGDDGGRGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGP
DGLPMPGCWQKGVTPWLVA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagaagtgaagcgacactatcgcacggcagcgctgaacatcatctcgtcttta
tgttcagtggcgtccatcgcgttctgcgtccatctgagcatcagcgcggcagacatcagg
agccgagttgtgggtttggagagcgggacgtcggagcgcaccttcatccaggtccgcgga
tactccatggaggatttcaattctctggtgcagcagagagtggacgagttgctttcccag
cgctcttatgagaatttcgccaagatcaggacggcaagacaagcctcagctgactgtaac
tgccccccaggacctcctggaaagagaggaaggagaggccgcgacggagaacctggacct
cctggtcctccaggtccacagggagaaaagggagatcaaggtgaccagggaccacggatg
gtcttcccaaagatcaatcatggctttctttccgctgaccagcagctcataaagcgtcgg
ctgattaagggagatcaaggccaggcaggaccacccgggcctccaggcccacctggccct
ccaggaccaaggggccctccaggggacactggaaaggatggacccagaggtttgccaggt
ctagcaggtgatccaggccagccaggagaaattggactcatgggacttgaggggcctcag
gggccaaagggttcactggggtctccgggtatccctggaacagatggactgaagggagat
gttggcatcccaggacaggacggaatcccaggggccaagggtgaaaagggagaacagggt
gaaaagggcgatatgggtgaagacggaccgaaaggtgacatgggcgagaagggtgatgca
ggctcctctgcagcaggcatcaagggcgaaccgggagaacctggacggagtggacagaag
ggagagccaggacttccagggctgcctggactcccagggataaagggtgagccaggattc
ctcggcccccagggagaaccaggacttccaggactcccaggaactaaaggcgagaaaggt
gaccacggaccagcaggaaagggtgatcgaggagaaatcggacctgctgggccaaagggt
tcacaaggagaatctggtatgcctggacctaaagggtcaaagggggatattggagataaa
ggagatttgggatctattggcccaagaggtcctcccgggcagaaaggagacagaggagcc
actgaaatcatcgactacaatggaaacatcgaagaagctctgcagaggattaccactatt
acagtcacgggtcctcctgggccacccggaccaataggaccaccaggctttaagggagat
cgcggtctgcctggtcttcctggactcgatggggagagaggttataaaggttccaaggga
gacatgggaatgcccggagcgtcaggggagaaaggaagcactggtttaactggcttacct
ggcgttaacggagcaaaaggagacaaaggagatccaggacttccaggtccacaaggtcca
tctataactggccctccagggccaccgggaccccacgggccctcgggacccatgggaccc
catggcttcccggggcctaagggagaacctggtttgcacggactaaagggcatgagaggg
gaaccgggacacaaaggagatcgtggacatatgggtctccctggagcctccggcttggac
ggcaagcccggaattaggggcacagacgggcctccgggtccagctggtccggccgggcca
aagggtgacattggtgagaaaggtgcatcaggtgagccgggacctcgaggaccttatgga
ctacctggagccgccggaacgccaggtttggatggattacctggattaaaaggagataaa
ggcgacgatggggggagaggagaaaagggggagaagggaaagaagggcaaaaaagggcct
aagggcgagaaaggagaacagggtgccccaggattagatgcaccctgcccattgggtccg
gatggattaccaatgcctggttgctggcagaagggagtcacaccgtggcttgtagcctga
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