Xiphophorus hellerii (green swordtail): 116733018
Help
Entry
116733018 CDS
T07363
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03020
RNA polymerase
xhe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116733018 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
116733018 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116733018 (polr2a)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116733018 (polr2a)
Enzymes [BR:
xhe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116733018 (polr2a)
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
116733018 (polr2a)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
116733018 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
116733018
NCBI-ProteinID:
XP_032439551
LinkDB
All DBs
Position
14:13672557..13687309
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGVISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKILRCVCFFCSKLLVDSN
NPKIKEILGKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEPQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPFKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVE
FQNLATLKPSNKAFEKKFRFDCTNERALRRVLQEDVVKDVLTNAHVQSVLEKEFEKMRED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVVEGVHELSKKLVI
VNGDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAYDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPVSPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggtgacagcgcatgcccattgcgcacgatcaagagagttcag
ttcggcgtcatcagcccagatgaacttaaacggatgtcggttaccgaagggggtatcaaa
taccctgaaacaacggaaggaggacgtcctaagcttggtggccttatggatccaagacaa
ggggtcatagaacgcagtgggagatgtcagacatgtgcaggcaacatgactgaatgtccg
ggccacttcggacacatagagctggcgaagccggttttccacgtcggcttcatatcaaaa
ataatgaagattcttcgatgcgtctgcttcttttgctcaaaactgttggtggattccaac
aacccaaagatcaaagaaatccttgggaaatccaagggccagccaaggaagcgtctaacc
cacgtctacgagctgtgcaaaggcaaaaacatatgtgagggaggggaagagatggacaac
aaatttggaatggagccacaggagacggaggaggacattaccaaggagaagggtcacggt
ggctgcgggcgctaccagccgcgcatccgacgctcgggcttggagctgtacgccgagtgg
aagcacgtcaacgaggattcccaggagaagaaaatcctgctgagtcccgaacgcgttcac
gagatcttcaagcgcatctcagatgaagaagacatcatcttgggcatggatcccaagttc
gcccgtccagaatggatgattgtgaccgtgctgcctgtgcctccgctggccgtgaggccc
gccgtggtcatgcagggctcggctcgcaaccaggacgatttgacccataagctggcggac
atcgtgaagatcaacaaccagctgagaagaaacgagcaaagtggcgcagctgctcacgtc
atcgccgaggatgtgaagctccttcagtttcacgtggccacgatggtcgacaacgaatta
ccaggcctgccgagggcaatgcaaaaatctggccgccctctcaaatccataaagcagcgt
ctaaagggaaaagaggggcgagtgaggggtaatctgatgggcaaacgcgtggacttctct
gctcgaaccgtcatcacccctgaccccaacctgcagatcgaccaagtgggcgtgccacga
tccatcgcggccaacatgaccttccccgagattgtcacaccctttaatatcgacagattg
caagagttggtccggagaggcaacagccagtaccctggggcaaagtacattatccgagac
aacggagacagaatcgacctgcgattccaccctaaaccaagtgaccttcatctgcaaatc
ggctacaaggtggaaaggcacatgtgcgacggtgacatcatcatcttcaaccgacagccc
acactacataaaatgtccatgatggggcacagagttcgaatcctgccttggtcgacattc
cgactcaacctcagtgtcaccaccccttataatgctgacttcgacggggacgagatgaac
ctccacctccctcagtcgctggagacgagggcggagattcaggagctggccatggtgccg
cggatgatcgtcacgccccagtccaaccggcccgtcatgggtatcgtgcaggacaccctc
acagccgttcgcaagttcactaaaagagacgtgttcttggagaggggtgaggtgatgaac
ctcctgatgttcctgtccacctgggacgggaagatgcctcagccggctattctcaaaccg
cgtccgctgtggacggggaagcagatcttcagcctcatcattccaggacacatcaacgtg
atccgcacccacagcacgcaccccgacgatgaagatagcggcccgttcaaacacatctcc
cctggtgacaccaaggtcatagtggagaacggggagttgatcatgggcatcctgtgtaag
aagtctctgggaacctcggctggctccctcgtccacatctcctacctggagatgggccac
gacatcaccaggctcttctactccaacattcagacggtggtcaacaactggctgctcatc
gagggtcattccattggtattggagactccattgctgatgctaagacgtacctcgacatc
cagaacaccatcaagaaggccaaacaggatgtgatagaagttattgaaaaagctcacaac
aacgagctggaaccgacacccggtaacaccttgaggcaaaccttcgagaaccaggtgaac
cgtatcctgaacgacgctcgtgacaaaacgggatcctccgctcagaagtcgctgtccgag
tacaacaacttcaagtccatggtggtggcaggctccaagggctcaaagatcaacatctcg
caggttatcgccgtggtgggccagcaaaacgtggagggtaagcgaatccccttcgggttc
aagcaccgcacgctgcctcacttcatcaaggatgactacggtcctgagagccgaggcttc
gtggagaactcctacctggctgggctgacgccgaccgagttcttcttccacgccatggga
ggcagagagggtctgatcgacacggctgtcaagaccgctgagacgggttatattcagcgt
cgtctgatcaaatccatggagtctgtgatggtgaagtacgacgccacggtgcggaactcc
atcaaccaggtggttcagctgcgttacggcgaggacggcctggcgggagagaacgtcgag
ttccaaaacctggcgacgttgaagccctccaacaaggcgttcgaaaagaagtttcggttt
gactgcaccaacgagcgcgcgttgagacgggtgctgcaggaagacgtggtgaaagacgtg
ctgactaatgcacacgtgcagagcgtcttggagaaggagtttgagaagatgagggaggac
agggagatcctgcgggcgattttccccactggtgacagtaaggtggtgctgccgtgcaac
ctggccagaatgatctggaacgctcagaagattttccgaatcaacactcgaaccccaaca
gacctaaatcccctgcgagtggttgagggcgttcacgagctgagtaagaagctggttatt
gtcaatggcgacgatcctctgagcaggcaggcccaggagaacgccactctgctcttcaac
atccacctgcggtcgacgctctgctccaaacgcatgacggaggagttccgcctgtccacc
gaggcttacgactggctgctgggagagatagagaccaagttcaaccaatccattgcccac
cctggtgaaatggtcggcgcgctagctgcccagtcgctgggagagccggccacccagatg
accctgaacactttccactacgccggagtgtcggccaaaaacgtcacgcttggtgtgcct
cgtctcaaagagttgatcaacatctcgaagaggcccaagacgccgtcgctgaccgtcttc
ctgctgggtcaggcagcacgtgacgcggagagagctaaggacatcctgtgtcgactggag
catacaacgctcaggaaggtgactgccaacaccgccatctactatgaccccaatcctcag
aacaccgtggtggccgaggatcaggagtgggtgaacgtctactacgagatgccggacttt
gatgtgactcgcatttccccgtggctgctgcgcatcgagctcgaccgcaagcatatgact
gaccgcaaactgaccatggagcagatcgcagagaagatcaatgcaggttttggtgacgac
cttaattgcatcttcaacgatgacaacgctgaaaaactggtgctgcgaattcgaatcatg
aacagcgacgagaacaagtttcaagaggacgaggaggttgtggacaaaatggacgacgat
gtgtttctgaggtgcatcgagtccaacatgctgacggacatgactctgcaaggcatcgag
cagatcagcaaggtgtacatgcatctgcctcagaccgacaacaagaagaagatcatcatc
acggaggatggagagttcaaggccctgcaggagtggatccttgagacggacggagtgagc
cttatgagggtgctcagtgagaaggacgtggatcctgtcaggaccacctccaacgacatc
gtggagatcttcacggttttgggtatcgaagctgtccgaaaagctctggagagagagttg
taccacgtcatctcctttgatggctcctacgtcaactaccgccacttggctctgctgtgt
gacactatgacctgccgcggtcacctgatggccatcacgcgtcacggcatcaaccgtcaa
gacaccggacctctcatgaagtgttcctttgaggagacggtggatgtgctgatggaggcg
tcctctcacggagagtgcgacccaatgaagggcgtgtcggagaacatcatgctcggccag
ctcgccccagcagggaccggctgctttgacctgctgctagatgctgagaagtgcaagtac
ggcatggagatcccgacaaacatcccgggcatcagcgtggcggggcccactggaatgttc
tttggctcggtgccgagccccatgagcggtatgtctcctgccatgacaccctggaacacc
ggagccaccccagcctatggagcatggtcccccagtgttggaagcggcatgacccctgga
gcagcaggtttctctcccagcgcagcgtcagacgcgagcggcttctctccaggttactcc
ccagcctggtctcccacaccggggtctccagggtctcctggaccagtcagtccatacatc
ccatctccaggtggagccatgtcaccaaactactctcccacctcccccgcctacgagcct
cgttctccggggggttacacccctcagagcccaggctactccccaacgtcgccttcctac
tcccccacttctccctcttactcccccaccagccccaactacagccccacgtctccatcg
tactcccccacttcacccagttactccccgacgtctccctcttactccccaacgtctccg
tcttactccccaacgtctccctcctactcccccacttctccctcgtactctccgacgtct
ccgtcatattctccgacctctccgagctacagcccaacatcgccaagctacagcccgacg
tcgcccagctactcccctacttcaccctcctactcgccaacctcaccctcttactctccc
acttctccatcctactcccccacttccccttcctactcccctacgtctccttcctactct
ccaaccagtccgagctacagccccacatcgccgaactacaccccaacatcccccagttac
tctcctacctccccttcatactctcccacatcgccctcttactccccaacctcccccaac
tacacaccaaccagtccaaactactccccaacttcaccctcttattcccctacatctcca
tcctactccccctccagtccacgctacacccctcagtcgcccacttacacacccagctcg
ccgtcgtacagccccagctctccatcgtactccccaacctcacccaaatacaccccgacg
tccccctcatacagccccagctctccggagtacacccccacctctccaaaatactcccca
acgtcgccgaagtactcgcctacatcaccgaagtactcccccacctcccctacctactcc
ccaacaactccaaaatacagccccacctcccccacctactcccctacctcccccacctac
acccctaccagccccaaatactctcccacctctcccacttactccccaacttcgcccaag
tactcacccacgtctccgacgtactcgcctactagccccaaaggctccacctacagcccc
acctcccccggctacagccccacctcccctacctacagcccggccatcagccctgatgac
agcgacgaggaaaacaactga
DBGET
integrated database retrieval system
