Xiphophorus hellerii (green swordtail): 116733730
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Entry
116733730 CDS
T07363
Symbol
lama4
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit alpha-4
KO
K06241
laminin, alpha 4
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04510
Focal adhesion
xhe04512
ECM-receptor interaction
xhe04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116733730 (lama4)
04518 Integrin signaling
116733730 (lama4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116733730 (lama4)
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SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_2
Laminin_G_1
EGF_laminin
Laminin_II
Laminin_I
EGF_LMN_ATRN
Laminin_G_3
JAG1-like_EGF2
HSA
Motif
Other DBs
NCBI-GeneID:
116733730
NCBI-ProteinID:
XP_032440426
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All DBs
Position
15:complement(24108423..24154230)
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AA seq
1879 aa
AA seq
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MAAKPLPCLCLVSILSGIICSTSASRLRYKEQQQTLMKCPRGSFVSQQNACLPCNCKGHA
DYCEDITGICINCKDHSTGDFCEMCEDGYILSSRQDGLHACVPCSCPLSAPSNNFAVYCK
KGISTVQCKCKEGYAGNHCERCAPGYYGNPMLIGSSCKRCDCNGNTDPNLIFNECHNVTG
RCQHCWGNTAGASCERCAPGFYGDAISAKNCRVCECDKCGTLSCDDRTGVCHCKPGVKGR
LCDQCEEGYFGFSSCQGCRRCECGPASLRTTCHPLTHSCPCRPGAGGRYCERCLTGYWDY
SQSGCRKCDCESGHCNMHTGECLAEATVNLCYNDCDDCIWQLIRDLTLSNKTLDQLKVGV
LNISTGAAANDRLKYYNYTAHHLQRQFEVWRNKLSAMKGKTGELEDSADAVVVDINALGE
SESQMNRQGAQLETETADMLAMAEQLDTNLTDLNKRIEDMIHDWELYNVQQEMDPETVRG
NTEVAQEMVSWMRQLDLSPREPIATDETTEAHDLLTRVRQLEKKLVISQGRVPSVQEILS
RFSSRLSEARDFLLSAAGTVQEAEDKNRASLLKFQRKETELQRLTEDQLAINGTLETSRA
FISDAERMVAEVDAMAQNVTEYHAEIDGASQKLTEKTERLSQVDRDLVQKADDHAAELEK
LAYELEEDLKEGDANGFVQRAISAANVYNNIVKYIDDANITSLTTHNLSQRAEDAIGTIK
TQLGYLVTQSENAFRQSVTLRSEQHDVDTKVADGMLYIEETQRTMEKNQKKLEEIVNDIR
VIQTDRTPQRLNFSLEVAEETLNRSAEVLETVTPINNKVQQWAHNMRNNEYSAAAYENAV
ASAKEAVENLNVLVPELLDKLKVVEEKKPVNNVTTNIQRIRELIAQARSVAKKVQVSMKF
TGRSSVEVHPPSNPEELKTVTSISLFMRVDPDKDPIEDRFILYLGDRSGRKDYMGLAIKN
DKLVFVYNLGRDDVEIPLTSKPVSQWPAVFNYIKVERLGRHGKVFLTIPSQGSTDEQKFI
QKGEAPIADSLFDIDPKNLVFFIGGVPPDIKLPPPLSLAPFVGCIELASINNDVISLYNF
KETHFLNIADSPPCPRYKLAFSQSRIASYLFDGTGYGLVSNIERRAKFGQVIRFDISVRT
ITNNCTIFLMVNGKNFFLLEMKNGFLRLTYDFSFSNGPKRLENNLPKFQINDAKYHEVSV
IYHMLKKVILLVDKTLLKTVENPQTPLPFSDIYIGGAPSSILKTRPELSSVVGLKGCVKG
FLFQKKDFNLLEEPGTVGISSGCPEELVMSREASFSGHSYLGSTAKISPFDNFEGGLNFR
TLQPSGLLFYHAQGSDEFSIALENGAVTLNHRGSKVKLQKKQYNDGRTHFLLASVNKQRN
LLLVDDKDKKELKRSPPTAKSSSDSPIKTFYYGGSPSSSLKNFTGCISHAYISRQDRDIE
GEDFQKYTEKVNVSLENCPIQRPPAALMSHHRGSSKAKQSLSQKVARDKSSHLPELPSSN
LESSEPNSHQSQSCHLSPRPRSTRQAFHYGGVANSRQHYEGIPDSLSERCHLSLSLKMES
PFGLIFYASDVQEDNFMALFVADGKLVFSFSVGDQKVQIRSEEKYDDGAWHSIACVRDGS
MGRLTVDRLTEFEDVAQANNVAWHVSDSLFVGGVPPGKAQRNIQRNSAYSFTGCLKNLQL
DGRRLSSVAESFGVGPCFEGLSEDGTYFSEEGGYVVLDESFELGLRFELTMEVRPRVASA
VLLHVRTAGGYFIMYIHQGAVVVVVHDGKHEFSTKVSPRHGVCDGSWHRITVIRDANVVQ
LDVDSEIKHVVGPVNPRSTDTRKPIFIGGAPDDFLPDSVATRKPYMGCMKNLTINKSPAS
FSKTVLVIGAVSVGSCPGA
NT seq
5640 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaaaacccttgccctgcctttgccttgtctccatcctctcaggaattatctgt
tcaacttctgccagccggttgcggtacaaggaacagcaacaaactctcatgaaatgtcca
agaggttccttcgtcagtcaacaaaacgcctgtctgccatgcaactgcaagggccacgcc
gactactgtgaagacatcactggcatctgtattaactgtaaggatcacagcacaggggat
ttttgtgaaatgtgtgaagacggctacatcttgagctccagacaggacgggctccatgcc
tgcgtcccttgctcctgccccctctctgccccctccaataacttcgctgtgtactgcaaa
aaagggattagtactgtgcagtgcaagtgcaaagagggctacgctggaaatcactgtgag
aggtgtgccccaggttactatggcaacccaatgctgattggttcatcttgtaagaggtgc
gactgcaacggcaacacggaccctaacctgatcttcaacgagtgccacaacgtgacgggc
cgctgccagcactgctggggaaacacggccggcgccagctgcgagcgctgtgcccccggt
ttctatggcgatgccatcagtgccaaaaactgcagagtgtgcgagtgtgacaaatgcggc
accttgtcatgtgacgaccggacaggagtgtgtcactgcaagcccggagtcaaaggtcgt
ctctgtgaccagtgtgaggagggttactttggcttctccagctgtcagggctgcaggagg
tgtgaatgtgggccagcttccctccgcacaacgtgccatccgctcacccacagctgtccc
tgccgcccgggggccggaggccgctactgcgagcgctgcctcacaggatactgggattac
agtcagtccggctgccggaagtgtgactgcgagagcggccactgcaacatgcacacagga
gaatgcctggcagaggccactgtcaacctctgctacaacgactgtgatgactgcatctgg
cagctgatcagagacctgacgttgtccaataagacgctggaccagctgaaggtcggagtg
ctgaacatctccacgggggccgccgccaacgacaggctcaagtactacaactacaccgct
caccacctgcagaggcagtttgaagtctggaggaataagttgtctgcaatgaaaggaaag
actggtgagctggaagattctgcagacgctgtggtggtggacatcaacgcgctcggagag
tcggagagccagatgaacagacagggggctcagttggaaactgagacggcggacatgttg
gccatggctgagcagctcgacaccaacctcacagatctcaacaaacgcatcgaagatatg
atccacgactgggaactgtacaacgtccagcaggagatggatccagagaccgtcaggggt
aacacagaggtcgcacaggaaatggtgtcatggatgagacagctcgacttgtcgccacgg
gaacccatcgccacggacgaaacaaccgaagctcacgacttgctgacgcgcgtccgtcag
ttagagaagaagctggtgatctcacagggccgagtcccgtccgtccaggagatcctgtcc
cgtttctcctccagactctctgaggcccgggactttctgctgagcgcagccggcaccgtg
caggaagcagaggacaagaacagagccagcctcctcaaattccagaggaaagagacagaa
ctgcagaggctgacagaggaccagctggccatcaacggcacactggagaccagcagagcc
ttcatctctgatgctgagaggatggtggctgaggtggacgctatggcgcagaatgtgaca
gagtaccacgccgagatcgacggcgccagccagaagctgactgagaagacggagcgtctg
tcgcaggtcgacagagacctggtccagaaggccgatgatcacgctgcggagctggagaag
ctagcctacgagctggaggaggatctgaaagaaggcgatgccaatggttttgttcagaga
gcaataagtgctgccaacgtctataacaacatagtgaaatacatcgacgatgctaacatc
acttccctcaccacgcacaacttatctcagagagcagaagacgccattggcacgattaaa
acccagcttggatatctggtgacacagagtgaaaatgccttccggcaatctgttacactg
agatcagaacagcatgatgtagatacgaaagtggctgatggtatgctatatatcgaggag
actcagaggaccatggaaaaaaatcagaaaaaactagaagagatagtgaatgacatccgg
gtgattcagacagacagaacccctcagcgtctgaacttttccttggaagtggcagaagag
actctgaaccgctcagcagaggtgcttgagaccgtcactcctatcaacaacaaagtgcag
cagtgggctcacaacatgagaaacaacgagtactctgctgctgcatacgaaaatgctgtt
gcatctgccaaggaagcagtggaaaacctgaatgttcttgttcctgagctgctggacaag
ctgaaggtggttgaagagaagaagcctgtgaacaacgtgaccaccaacatccagaggatc
agagagctcatcgctcaagccagaagtgtggccaagaaagttcaggtgtccatgaagttt
actggacggtcttcagttgaggttcatccgcccagcaacccggaggagctgaagacggtg
acatccatcagcctgttcatgagggtggacccagacaaagaccccatagaggaccgcttc
atcctgtatttgggagacagaagtggcaggaaggactacatgggtttggccatcaagaat
gacaaacttgtgtttgtgtacaacctcgggagagacgatgtggaaatccctctgacctcc
aagccagtcagtcagtggccagcagtctttaactatatcaaagtagaaaggttggggagg
catggaaaagtcttcctgactattcccagtcagggctccacagatgagcagaaattcatc
cagaaaggcgaagctcccatcgccgactcactgtttgatatcgaccccaagaatctggtg
ttcttcatcggaggtgtcccaccagacatcaagctacctcctcctctgagcctggccccg
tttgtgggctgcatcgagttggcttcaatcaacaacgatgtcatcagtctgtacaacttc
aaagagactcactttttaaatatagctgattctcctccctgccccaggtacaagttggcc
ttctcccagagtcgcattgccagctatctgtttgatggaacgggctacggactcgtcagt
aacattgagaggagagccaagtttggtcaagtcataagatttgatatttctgtacgaacg
atcacaaacaactgcaccattttcctcatggtcaacgggaaaaattttttccttttagag
atgaagaatggcttcctgcgcctaacatacgactttagcttcagcaatggacctaaacgt
ctggagaataacttaccgaagtttcaaataaacgatgcaaaataccacgaggtgtcagtg
atctaccatatgttaaagaaagttattctactggtggacaagacccttcttaaaactgtc
gagaatccccaaacccccctgcctttctcagatatctacatcggtggagctccctccagc
atcctcaaaaccaggccggagctgtcttctgtggttggcctgaagggttgtgtcaaagga
ttcctgttccagaaaaaagactttaacctgctggaggagcctggtaccgttgggatcagc
agcggctgccctgaggagttggttatgtcccgtgaagcttcgttcagtggccacagctac
ctgggatccaccgcaaaaatttcacccttcgacaacttcgaaggagggcttaacttcaga
acgctgcagcccagtggactgctgttctaccacgctcaagggtctgatgagtttagcatc
gccctggagaacggagcggtcacactgaaccacagagggtcaaaggtcaaattacagaag
aagcaatacaacgatggaaggacacacttcttactggcttcggtgaacaagcagaggaat
ttactactagtggacgacaaagacaaaaaggagttaaagcgatcaccaccaactgcaaag
tcctcctctgattctcccataaagaccttttactatggaggctctccaagcagcagctta
aagaacttcactggttgcatcagccatgcatacatcagcagacaagaccgagacattgag
ggtgaggacttccagaagtacaccgagaaggtgaatgtttccctggagaactgtccaata
cagcgacctcccgctgcactgatgtctcaccacagggggtcttctaaagccaaacagagc
ctgtctcaaaaggttgccagagataagtccagtcatcttccagaactccccagctctaat
ctggagtcatcagagccaaacagtcatcagagccagtcttgccacctctcccccagacct
agatcaacacgccaagccttccactatggtggcgttgccaacagcaggcagcactacgag
ggaatccctgactctctgtctgaaaggtgccacttgtctctgtccctgaagatggagtca
cctttcggcctcatcttttatgcatcagatgtccaagaggacaactttatggctctgttt
gtggccgatggaaaactcgtgtttagtttcagtgtgggagaccagaaagttcaaattagg
agtgaagagaaatatgatgacggcgcatggcacagtattgcttgtgttcgtgatgggagc
atggggcgactaactgttgacaggctgacagagtttgaggacgtagctcaggcaaacaat
gtcgcctggcatgtcagcgactccctctttgtcggaggagttcctcctggaaaagcacaa
aggaatattcagagaaactcggcttacagcttcactggctgtttgaagaaccttcagctt
gatggacgaaggctgtcctctgtggctgagagtttcggggtcggtccatgctttgaagga
ctctctgaggatggaacgtacttctcagaggagggaggatatgtggttttggatgaatcc
tttgagctgggactgaggttcgagttaacaatggaggtgcgccctcgtgtggcctcagcg
gtgctactgcatgtgcgcacggcagggggttatttcataatgtacatccatcaaggagct
gtggttgttgttgttcatgacgggaaacatgagttctctacgaaggtgtcaccgagacac
ggtgtgtgtgacggctcctggcacagaataacagtgatccgggatgccaacgttgtccag
ctggatgtggactctgagattaaacacgttgtgggccccgtgaacccccgctccacagac
accaggaagccgatatttatcggtggagctccagatgacttcctcccagacagcgttgcc
accaggaagccctacatgggctgcatgaagaacctgaccatcaacaagagcccagcaagc
ttcagcaagacggttttggtgattggagccgtcagtgtgggaagctgtcctggagcataa
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