Xiphophorus hellerii (green swordtail): 116734046
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Entry
116734046 CDS
T07363
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116734046 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116734046 (hbs1l)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116734046 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
116734046
NCBI-ProteinID:
XP_032441056
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Position
15:16231232..16257735
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AA seq
835 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDMYGQSVEDDYCISPATANQFIYSRRELQAPKEEPLEEEEY
EAEDVPMSPCVDYNLDPLNQAKLFSCLDHMRAVLGDAVPDSVLTQAAMKHGFDPQRALDA
VLSEDSKTAPVTRSAAEDMPSVGRVAQEQTPLPQRTKQEAVAEKGACLFHTDNTPKAHKA
TQPSEINMQNILLQHKPDLVKSNSVKENIHPESSHLGISCGTSLAQLMSEHEQKSKTGVS
DTGRGVAVSSLSTLTSASNSQLTTASNRSGFSLGTLASLQMTSTPQTPTPSILSVSLAKS
RDAAPDKLDSEVVPKVARMTVSGKKQTMGFDVPSSGENGVVASPARRGDSPENTKATPVP
EAAPKRPETPSKASNGDEVSASATPGRSSGKTRQAINIKAELERRQGGKPLLNLVVIGHV
DAGKSTLMGHLLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVG
MTKFETNSKVVTLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREH
ALLVRSLGVTQLAVAVNKMDQVNWQQERFQEISSKLGHFLKQAGFKESDVFFVPTSGLSG
ENLTARSTVSELTSWYSGHSLLEQIDAFKAPQRSIDKPFRLCVSDVFKDQGSGFCVTGKI
EAGFIQTGDKILAMPPNETCTVKGITLHDEALDWAAAGDHVSLTVTGMDIIKINVGCVFC
DPKEPIRVCTRFRARILLFNIEVPVTQGFPVLLHYQTVSEPATIKKLISVLHKSSGEVLK
KKPKCLSKGMNAVVEIQTQRPVSLELYKDYKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgccacagaaatgttcgaggttacaactacgatgaagactttgaagatgacgac
atgtatggacagtctgtggaggatgactactgcatttcaccagcaacagccaatcagttc
atctattcacgccgagagcttcaagcacctaaagaggagcctctggaggaggaagaatat
gaagctgaggatgttcccatgtccccttgtgttgactacaaccttgaccctcttaatcaa
gcgaagctgttctcctgtctggaccacatgcgagcagtactgggagatgcagtgccagac
tccgtcctgacccaggctgccatgaaacacggatttgatccacagagggctctggatgca
gtgctgtctgaagacagtaaaacagcaccggttaccagaagtgcagcagaagacatgccg
tcagtgggccgagttgcacaagagcagacgcctcttccacagagaaccaagcaggaggcc
gttgctgagaaaggagcctgcttgtttcacacagacaacacacccaaggcacacaaagct
acacaaccaagtgaaatcaatatgcagaacatcttattgcaacataaacctgacctggtg
aaaagcaactctgtcaaggaaaacattcaccctgaaagttctcatttaggcatcagctgt
ggtaccagtttggctcagctcatgtctgagcatgagcagaagagtaaaacaggagtgagt
gatacagggcgaggggtggctgtttcctccttgagcactttaacatcagcatctaattcc
caactgacaactgcgtctaacaggagtggtttttcacttggaacgctggcatctttacaa
atgacttcaacaccacaaacaccgactccctccatcctttctgtctcactcgcaaaaagc
agagatgcggctcccgataaactggactccgaagtggttcccaaagtcgccagaatgacc
gtctctggcaagaagcagactatgggcttcgatgttcccagctcaggggaaaacggcgtt
gtcgccagcccagcacggcgaggtgacagccctgaaaacaccaaggcgactccggtcccc
gaggccgcacccaaacgacccgagaccccatccaaagcgtcaaatggagacgaggtctct
gcctctgctacaccaggacgctcctccggaaagacgcggcaggcgatcaacatcaaggca
gagctggagaggagacaagggggcaaacctctgttaaatttagtagttataggtcatgtg
gatgcaggtaagagcaccctaatgggccacttgctttatctgctgggaaacgtcaacaag
cgcaccatgcacaagtacgaacaggagtcgaaaaaggctggaaaggcctcctttgcctac
gcctgggttctggatgaaactggcgaggagagggacagaggggtgacaatggatgtgggc
atgacgaagtttgagacaaactctaaggtggtgactctaatggacgctccgggacacaaa
gacttcattcccaacatgatcacaggcgctgcacaggctgatgtcgcggtgctcgtggtg
gacgccagcagaggagagttcgaggcaggctttgaagcagggggtcagaccagagagcac
gccctgctggtgcgttcgctgggtgtcactcagctggctgtcgctgtaaacaagatggac
caggtaaactggcaacaggagcgtttccaagaaatcagctcaaaacttggccattttctg
aagcaggcaggattcaaggagtccgatgttttctttgtccccaccagcggcctttcagga
gaaaatctcactgcaagaagcacagtgtcagagctgacatcttggtacagcggacacagc
ctgctggagcagattgatgcattcaaagcccctcaacggtcaatagacaaacctttcaga
ctgtgcgtctcagatgtgttcaaagatcagggctcaggcttctgtgttacagggaagatt
gaggctggttttattcagacaggagacaaaatactggcaatgcctcccaatgaaacctgc
acagttaaaggaatcactcttcacgatgaggcgctggactgggctgcagccggagaccac
gtcagcctcacagtcactggaatggacatcatcaagattaatgtcggctgtgtgttctgt
gatcccaaggagccgattcgagtctgtactcgattcagggccagaatcctgctcttcaat
atcgaggttcccgtcacacaaggctttccagtactgttgcattaccagacagtcagcgag
ccggccactattaagaaactaatcagcgttctgcacaagagcagtggtgaagtcctaaag
aagaagccaaagtgtttgagtaagggtatgaatgcggttgtggagattcagacccagagg
ccagtgtcattagagctatacaaggactataaagaactgggccgcttcatgttgagatac
gttggctccaccatcgctgcaggtgtcgtcacagagatcaaagaatga
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