Xiphophorus hellerii (green swordtail): 116734271
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Entry
116734271 CDS
T07363
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116734271 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116734271 (cpsf2)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116734271 (cpsf2)
U7-dependent histone pre-mRNA processing factors
116734271 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
116734271
NCBI-ProteinID:
XP_032441461
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Position
15:complement(9666633..9675947)
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AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRSNSEDFTLFTLDDVD
SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESISRPSLLITDSFNAAYVQPRRKQRDEQLLTNVMETLRGNGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLNLCHSLADLARVPSPKVVLCSQPDLESGFSRELFTQWCQNAKNSIILTYRTT
PGTLARYLIDNPGEKMLDLEVRKRVKLEGKELDEYLEKEKIKKEAAKKLEQAKEVDVDSS
DESDMEDDLDQPAAVKTKHHDLMMKGEGSRKGSFFKQAKKSYPMFPVHEERIKWDEYGEV
IRIEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSVVPTKCVSSVENFEIRARVTYID
YEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFSKDIKVYTPKLQETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVAKVDTGVMLEEGVKEEAEDSE
VPMDTAPELGIDNNATSVAAQRAMKNLFGEDEKEMSEESDVIPTLEPLPPTEISGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNVVAVRRTEPGRIGLEGCLCDDYYKIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacttccattatcaagctgacagccgtgtcgggggtccaggaggaatcggctctttgc
tacctgcttcaggtggatgaatttcgtttcctcctggactgtggatgggacgagaacttc
tcaatggacattattgatgccatgaagcgatatgttcaccaggttgatgcagtcctgctg
tcgcaccctgaccccattcacttgggagccctgccctatgctgtgggcaaactgggtctg
aactgcaccatctatgccaccattcctgtctacaaaatgggtcagatgttcatgtacgat
ctatatcagtcaagaagcaacagtgaagatttcacgctcttcaccctggatgacgtggac
agtgcttttgataaaatccagcagctgaaatactcacagattgtcaatctgaaaggaaag
gggcatggtctgtcgatcactccgctcccagccggacacatgatcggaggcaccatttgg
aaaattgtcaaggacggggaggaggaaatagtttatgcagtggacttcaatcataagaga
gaaatccaccttaacggctgcacactggagagcattagtcgaccgtctttactcattaca
gattccttcaatgctgcttatgtacagccacgccgcaaacaaagagacgagcagctgctt
acaaacgtaatggagaccctgcgtggtaatggtaatgtccttattgccgtggatacggcc
ggccgcgtgttggagctagcgcagctcctcgaccagatttggaggacgaaggatgctggg
ctcggagtttacccgctagcactgctcaacaacgtcagctacaacgtggtggagttctcc
aagtcccaggtggagtggatgagtgacaaactcatgaggtgttttgaggacaaaaggaac
aatccgttccagttccgacacttgaacctttgccacagtctggcagacctggcccgggta
cccagcccaaaggtggtgctttgcagccaaccggaccttgagtctggcttctccagggag
ctcttcacccagtggtgccaaaatgctaaaaattctatcatccttacctaccgcaccacg
cctggcaccctggcccgctatctcatcgacaatcctggagaaaagatgctggatttggag
gtcagaaaacgagtaaaactggaagggaaggagctggacgagtatcttgaaaaggagaaa
ataaagaaagaagcagctaaaaaactggagcaagccaaagaggtggatgtggattcgagc
gatgagagcgatatggaagacgatctggatcagccggctgcggtgaaaaccaaacatcat
gacctgatgatgaagggagaggggagccgcaaaggaagcttcttcaaacaggccaaaaag
tcatatcccatgttcccggtgcatgaagagagaatcaaatgggacgagtatggagaagtc
atcaggattgaagattttttggttcctgaactgcaagccacagaagaggagaagagcaaa
ctggaatctgggctgacaaatggcgacgaacccatggaccaggatttgtctgtcgttcct
acaaaatgtgtctcaagtgttgagaattttgaaataagagcgagggtgacgtatatagac
tacgaaggtcgctctgatggcgactccataaagaagatcataaatcagatgaagcccaga
cagcttgtgatcgttcacgggccaccagaagcaagtttggacctggctgagtcctgcaaa
gctttcagcaaagacatcaaagtttacacacccaaactgcaggagactgtggacgccacc
agcgagacacacatctaccaggtgcggctgaaagactccctggtgagctctttgcagttc
tgcaaggccaaagacacggagctggcctggatcgacggtgtgctggacatgcgcgtcgcc
aaggtggacaccggcgtgatgctggaggagggtgtgaaagaggaggcggaggacagcgag
gttcccatggacaccgcccccgagcttggcatcgacaacaacgccacgtccgtggcggcg
cagcgtgccatgaagaacctgtttggagaggatgagaaggagatgtcggaggagagcgac
gtcattcccactctggagccgctgcctcctactgagatttcaggccatcagtctgtgttc
atcaacgagcctcggctgtctgacttcaagcaggtcttactgagagagggcatccaggct
gaatttgtgggtggagttctggtgtgcaacaatgtggtggccgtccgcaggacggagcct
ggacgcatcggcctagaaggctgcctgtgtgacgactactataagatccgggagctgctg
tatcagcagtacgctgttgtgtag
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