Xiphophorus hellerii (green swordtail): 116734372
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Entry
116734372 CDS
T07363
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe00100
Steroid biosynthesis
xhe01100
Metabolic pathways
Module
xhe_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
116734372 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
xhe01006
]
116734372 (fdft1)
Enzymes [BR:
xhe01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
116734372 (fdft1)
Prenyltransferases [BR:
xhe01006
]
Terpene biosynthesis
Squalene/phytoene synthase
116734372 (fdft1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
HAUS4
GBP_C
Motif
Other DBs
NCBI-GeneID:
116734372
NCBI-ProteinID:
XP_032441611
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Position
15:complement(13165272..13171997)
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AA seq
457 aa
AA seq
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MAGACCKCPASLSVLKRSLSVAPRGCGSSPPRSVLQGWRRRGDRGLQEATRPSSALRTAG
FYRQTAFLCLSCQESMSDSLRTCYVYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALD
TVEDDMTISLEKKVPMLNNFHTYLYQEEWCFTESHEKDRRVLEDFPTISLEFRNLAQEYR
DVISDICHRMGVGMAEFLEKKVGSVKEWDLYCHYVAGLVGIGLSRLFSASQLEDPEVGRD
TDLANSMGLFLQKTNIIRDYLEDTQEGRAFWPKEAWSQFASRLEDLAQPEKLESALSCLN
LLVTDALRHVPDVIAYLSRLRNQSVFNFCAIPQVMAIATLSTCYNNPMVFQSVVKIRKGQ
AVTLMMEATNMRAVQTIIAQYSQEILQKVSLTDPTRDKTLHILAVIQEKSALPQPDVSCR
NHHLSPMYLSAAMLLAALSWQYLSTTAAQAQSTGDMQ
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcctgctgcaaatgtccggcctctctgtccgtgttgaagcgctctctctcg
gtggcgccgcgaggctgcggctcctctccccctcggtccgtcctgcagggctggaggagg
cgcggggacaggggcctgcaggaggccaccagacccagtagcgccctcagaaccgcgggt
ttctaccgacaaacagcctttctttgtctctcctgccaggagtctatgagcgacagcctg
cggacctgctacgtatatctgaatcagaccagcaggagctttgcggccgtgattcaggca
ctggacggagagctgagacatgcggtttgcatcttctacctggtgcttcgtgcactggac
acagttgaggacgacatgaccatctctttggagaagaaggtgcccatgcttaacaatttc
cacacgtacctgtaccaggaggagtggtgcttcactgagagccatgagaaggaccgtcga
gttctggaggatttccctacgatatcactggaatttagaaaccttgctcaggaatacaga
gacgtcatctctgatatctgccaccggatgggagtcgggatggctgaatttctggaaaag
aaggtgggatccgtgaaagagtgggacctgtactgccactacgttgccggtctcgtcggc
atcggtctgtcgcggctcttctctgcctcccagctggaggatccagaagtgggacgggac
accgatctggcaaactcaatgggcctgttcctgcagaaaacaaacatcatccgagactat
ctggaagatactcaggagggacgggccttctggccaaaagaggcgtggagccagtttgcg
agtcgtctggaggatctggcccagcccgagaagctggagtcggctctgtcctgcctcaac
ctgctggtcaccgacgctctgcgtcacgtccccgacgtcatcgcctacctgtctcggctg
cgcaaccaaagcgtcttcaatttctgcgccattccacaagtgatggcaatagctaccctc
tcaacgtgctacaacaacccgatggtgtttcagagtgtggtgaagatcagaaagggacag
gctgtcaccctcatgatggaagccaccaacatgagagctgtgcagaccatcatcgctcag
tacagccaagagattttacagaaggtctccctcaccgatccgacacgggacaagacgctg
cacatcctggctgtgatccaggagaagtcggcccttcctcaacccgacgtcagctgcagg
aaccaccacctgtctcctatgtacctgtcggctgccatgctgcttgccgctctgagctgg
cagtatctcagtacgacagctgcccaggcgcaaagcacaggggacatgcagtga
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