Xiphophorus hellerii (green swordtail): 116734608
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Entry
116734608 CDS
T07363
Symbol
rev3l
Name
(RefSeq) DNA polymerase zeta catalytic subunit
KO
K02350
DNA polymerase zeta [EC:
2.7.7.7
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
116734608 (rev3l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116734608 (rev3l)
Enzymes [BR:
xhe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
116734608 (rev3l)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
TLS (translesion DNA synthesis) factors
B-family DNA polymerases
116734608 (rev3l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4683
DNA_pol_B
POL3_N
REV3_N
DNA_pol_B_exo1
zf-C4pol
Motif
Other DBs
NCBI-GeneID:
116734608
NCBI-ProteinID:
XP_032441986
LinkDB
All DBs
Position
15:complement(23856403..23920711)
Genome browser
AA seq
3006 aa
AA seq
DB search
MFAVRIVTADYYLASPIKGLDVCYSEFRESEVKKVPVVRIFGATPAGQKTCLHLHGVFPY
IYVPYDGCRQQPERYMRRVAFSIDRALNVAMGNPAASTQHVFKVVLVSGMPFYGYHAKEK
HFMKIYLYNPQILKRVCELLQSGAVMNKSYQPHEGHIPYLLQLFMDYNLYGMNLINMATV
KFRRSQKKVGPADRDQPSSSSHSSISPWKIPCSTKLNDSSLAGTFVHWEENALPSSLVLD
DVERQSTCELEVDAVAVDILNRLDIENQIGRNPGLQAIWEDEKQRRRENNQTSQIEAPDS
QDRDSVTSTESEKTFMNRLKEILRENKFDVTQDLFVDDEQESLSAELTLHPDLLTPDRVP
CTAANAVETHRDSQPDSVRSSGKVPEEAVIDEEAILSLLENSQTFLPLSQTANNSTLLES
SQDHALIDLLAGLEDDGFHRTPLIHSSQPQSLPGASTYNCNSDEEEAGPELEKEEAELSM
IMSQRWDSEHPGRTNPPRPAVREAEDGFSDEQQESSDEDMEWSGTHSLFLNLSIPQLDGA
ADESSDSSLTDSGSMSQSSLTVTEKLLGKSNPCTGETVHLEPPSSAKILLCKHPEHRPVR
GLDTEEQLKNSFQLKNSPDGSNECSAGFRVNKEITYILPVKHPIPRKIANHTEVPPICMD
KEDIRPLYTYNKKTSKPVEKADLEAFPFSSGKVSKNRKRYSSLETVETNRLSIFQNHSTI
SLCYSDLRACSAKTELELSTKERKSPILRSLTSTPSLMKEGEFIDHKEELAPESEEGDVG
ELKIRYEDYQENKTERTIVAQQEAHYKFFPSVILSNCLNRKKTVNKKPADTCSKPELSPT
CKLKLKLPKKRLGMAGHRNKAAAAQSPISDSPVCTGLCSETPACNQTSDTEGPVSEDQPK
PQAEVNEDEPNEEVEPAINEELDNEEKTVDEQIEPVSEAVVSNTTITFFLCEEVKDVTED
RLSLDPDVSAKVSCTKSSALPGSKYTLRAKRKQNFDGTDEDQPGSSRSKNSSKFPRGQET
KYQKRRKKEPPVIIKYIIINRFKGQKNMLVKMSKVNADEQLVMLTADKVEHYNKLAPLKS
FWPKVPESTAIRFPVKEPKAKKSPKRKARVNNTGKKTINISPKKPLVRRGQRMKRSTGCQ
RGPLLPSLPPPRPCYCELADDFEKEYTDVMVELGYLSDRSPSPTESTPPRCWSPSDPFLN
STEQLINPLSDPCLSSASLNPCTKSVTKRGQRRSRTAKPKKSTESKRKVNMSAAKPSQVQ
EPKQVKARRGAAAAARQRKKASNSTESSAISPRPRRSRKKKTDKPKSDDLCKEDSQLLFS
DGGLAPSESSSQDITSFQQPLGTDITGQSRSSASDTLMPTSASFIEPKAEDCETSIMQVN
QNMLASVEMKQQGCQTTMIKVESCPEYCTAPQPPAETSNDVQKDKGCLPSAPKNGETPAL
TETPSGLAVLKQLLQKRQQGQALPLKVVGTDRHAAAIAQAAVLLNPSAKHTKPIRTPSTA
PRKPRVPKSTAPKEKKPRNRKSRTSSTQPDQSVKQDGSMSDDCPLFSSAPSLASCNFIED
SLSPELPQDYTFDINTIHQAEFSSPYSGNQFVLTDKNLPVKFLSDICHELPSAQAQGLEG
LSQSQTERDSAVCKVRPASPELFDRSGNGEPSTNLALLQSEKHRPERQREWDLSFYKSHT
LSPFQDFHCERKEFLFSAFDPVIPLSLSSVSFVDQEGSPTSELHESIDGLTSTTPSSSPH
SISSLSHVRASQLQRGTGGGAHVLKPLMSPPSRDEILSSLMDLEMSEATFQEPFCSDPSD
IPNKPMEVGGRKLTVGTRLVRELQEFGGDLSLEGLHFWKTAFCVMTHPATTITSSQGAEV
EQAKEEKTGLLASSASDKKVVLLPCRNPPSHERVQLWLEARKQYDSLQKERREPGKKREG
ADVEQENPDRTNLPNVSRCISVNIEHYGNTSSVRTRRRKKLSLSLALSPLVDTGPRSNTT
TLSPVSDESTVSPQPEKQEDASNTVSPESPELPPWQEPHQLSPSAPERLGSKNSPESPSS
RLPDSQERFGADQSPFPFHGADGNGGSSNPHRLHTTPFLRKRRRSTEDLDPVCSTPISDK
DPVSRRRRSQTDPLRRVLLTTQMKNQFAAINVPKKEQSQIEGPSIANSYGFKVSMQNLQD
AKALHEVQYLTLMGMELHARSRRDLEPDPEFDPICALFYCLSSDAPLQGGDGTQLTGAIM
VDKDHESCGQGPRSKAPLLVRSGVSGLQVTYAREEKMLFQELIAIMRRFDPDILLGYEVQ
MHSWGYLLQRAAAIGVDLCQQLSRIPGDSKENRFAAERDEYGADTMTEINIIGRVTLNLW
RVMKSEVTLNNYSFENVAFHVLHQRFPLYSPRTLSDWFDHITHLHRWKMVDHYVSRLHGT
MQLLQQQDIIGRTSELARLFGIQFLHVLTRGSQYRVESMMLRVAKPLNYIPVTPSVQQRA
QQRAPQCIPLVMEPESRFYSNSVVVLDFQSLYPSIVIAYNYCFSTCLGHVDSLGTPDEFK
FGCTSLRVPPELLHQLRNDITVSPSGIAFVKSSVRKGVLPSMLEEILSTRIMVKQSMKSY
RQDKALMRLLDARQLGLKLIANVTFGYTSANYSGRMPSVEVGDSIVHKARETLERAIKLV
NDTKKWGARVVYGDTDSMFVLLKGATKEQAFKIGHEIAEAVTATNPKPVKLKFEKVYLPC
VLQTKKRYVGYMYESLDQKEPVFDAKGIETVRRDGCPAVSKILERSIKLLFETRDISQVK
QFVQRQCVKVLDGRASMQDLTFAKEYRGSGSYRPGACVPALELTRRMMAYDRRLEPRVGE
RVPYVIVYGMPGVPLIQLVRRPMEVLLDPSLRLNSTYYITKQILPPLGRLFQLIGVDVFG
WYQELPRIQKASCSSAVGGEEPAGRKGTISQYFTTLHCPVCDELTQLGVCAQCRADPQRV
AVTLYQDVRQWESQQEQLLKICRNCSSCTERHVPCVSLDCPVLYKLSRVNRQLSKAPYLR
QLLEQF
NT seq
9021 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcagtgcgcatagtcaccgcagactactatctcgcaagtcccattaaaggcctg
gacgtgtgttactctgaattcagggagagtgaggtgaagaaggtaccggtggtgcggata
tttggagcaacgcctgcaggtcagaagacatgtctccaccttcacggtgtgttcccatac
atctatgtgccatatgatggctgtagacagcagccggagcgctacatgcgacgggtggcc
ttcagcatcgacagggccctcaacgttgccatgggaaaccccgccgccagcacccagcac
gtcttcaaggtggtgctggtctctgggatgcctttctatggttatcatgccaaggagaag
cactttatgaagatctacttgtacaatcctcagatactgaaaagagtgtgtgagctatta
caaagtggagcggtgatgaataagagttaccagcctcacgagggccacattccctacctg
ctgcagctcttcatggactacaacctgtatggcatgaacctgataaacatggcaacagtg
aagttccgcaggagccagaagaaagtgggccctgcagaccgggaccagccgtcctccagc
tctcactccagcatcagtccctggaagattccctgcagcaccaagctgaacgacagcagc
ctcgcaggcacctttgtccactgggaagagaacgctctgccctcctcattagtcctggat
gacgttgagaggcagagcacctgtgagctggaggtggatgctgtggccgtggacatcctg
aaccgtcttgatattgaaaatcagattggcaggaaccctggactgcaggctatttgggag
gatgagaagcagaggaggagggagaacaaccagacctcccagatagaagcgccggattca
caagatcgggactcggtcacttcaacagagagtgaaaaaaccttcatgaacagactgaag
gagattctgagggagaacaagtttgatgtgacccaagatttgtttgtggatgatgaacag
gagagtttgtcagctgaactcactctgcatcctgacctcctgacccctgacagggtgccg
tgtacagctgctaacgccgtggagacgcacagagactcccagccagactcagtgaggagc
agtggaaaagtcccagaggaagctgtcattgatgaagaagccatcttaagtcttctggaa
aacagccagacgtttctgccactctcacaaacggccaacaactccaccctattagaaagc
agccaggatcacgccctcattgatttgctggctggcctggaagacgatggtttccacagg
actccactaatacacagctctcagcctcagtcgctccccggtgcatcaacctacaactgc
aacagtgatgaagaagaagccggacccgagctggaaaaagaagaggcggagcttagtatg
ataatgtcacagcggtgggacagcgaacatcctgggagaacaaacccaccgaggcctgcg
gtcagggaggcagaggacggcttcagcgacgagcagcaggagtcctctgacgaagacatg
gagtggagtgggactcactctctgtttcttaatctgtccatcccacagctggacggggca
gcagacgaaagcagtgattcttctttaacagacagtggctccatgtctcagtcttcgctt
acagtcacagagaagctgttggggaaatcaaatccctgcactggagagactgtccacctg
gagccgccatcgtcagctaagatcttgctgtgcaagcatcctgagcacaggccagtccgt
gggctggacacggaggaacaactcaaaaactcctttcagttaaaaaacagcccggacggc
tccaatgaatgttcagcaggtttcagggttaataaagaaatcacatacatcctgccagtg
aagcacccaattcctcgcaaaatagccaatcacactgaggtgcctcctatctgcatggac
aaggaggacattcgaccattgtacacgtataacaagaaaacctccaaacctgtggagaag
gctgatctggaagccttcccttttagcagtggaaaagtgtcaaaaaataggaaaaggtac
agcagccttgaaactgtagaaactaaccgtttatccatctttcagaaccacagcaccatc
tccctttgttactcagacctcagagcctgctctgctaagacagagctggagctgagcact
aaggagagaaaaagcccaattctgaggagcctcacctcaacaccgtccctcatgaaggag
ggcgagttcatcgaccacaaagaagaactggccccggagagtgaggaaggagatgttggg
gagctcaaaattagatatgaagactaccaggaaaataaaactgagagaactattgtggcc
cagcaggaggcacattacaagttcttccccagtgttattctctccaactgtctcaataga
aagaagactgtaaataaaaagccagctgacacctgcagcaagccagagctgtccccgact
tgcaagctgaagctgaaacttcctaaaaaaaggttaggaatggcaggacataggaacaaa
gcagcagcagctcagagcccgatttctgacagtccagtttgcactggcctctgttcagaa
acacctgcttgtaaccagacttcagacacagaggggccagtttcagaggatcaaccaaaa
ccacaggctgaggtaaatgaagacgagccaaatgaagaagttgagccagctataaatgaa
gagttggacaatgaggaaaagacagtcgatgagcagatagaaccagtgtcagaggctgtt
gtctccaacaccaccattactttctttctttgtgaagaagtcaaagatgtaacagaggat
cggttgagccttgacccagatgtatctgcaaaagttagctgtactaaatcatcagcactg
ccggggagtaaatacacactgagggctaaacggaagcagaactttgatggtactgatgaa
gaccagccaggttccagtcgttctaaaaactccagcaagtttcccaggggccaggagacc
aaataccagaaaagacgcaagaaagaacctcccgtaattatcaagtacatcataatcaac
aggttcaaaggtcagaaaaacatgttggtgaagatgtccaaagtgaatgcagatgaacag
ctggtcatgttaactgcagataaagtggaacattacaataaactggctcctctcaagagc
ttctggcctaaagtgccagagtccactgccatcaggtttcccgtcaaagagcccaaagct
aaaaaatcgcccaagcgaaaagccagggtcaacaacacaggcaagaagacgatcaacatc
tctcccaaaaagcctctcgtcagacgagggcaaaggatgaaaaggagcacaggctgtcag
agaggcccacttctgccctctctgcccccccctcggccatgttactgtgagctagcagat
gactttgagaaagagtacactgatgtcatggtagaactgggctatctttctgatagatcc
ccaagcccaacagaatcaacgcccccgcgttgttggtccccaagtgacccttttctaaac
agtacagaacagctgataaatccactcagtgatccttgccttagctctgcatcactaaat
ccatgcacaaagtctgtgactaaaagaggccaaaggagaagtcgaacagccaaacctaag
aagtccacagagtctaaaagaaaagtaaacatgtctgctgctaagccctcacaggtacaa
gagcccaaacaggtgaaagcaaggagaggtgctgctgctgctgcaaggcaaagaaagaaa
gctagcaattcaactgaaagttctgcaatatctccaagacctagaaggtcccgcaaaaag
aaaaccgacaaacctaaaagtgatgatttatgcaaagaagactcccagctgcttttctct
gatggcgggttggctccatcagagagttcctctcaagacatcacctcctttcagcagccg
ctaggcaccgatatcaccggtcagagcaggtcctcggcttcagacacattgatgcccacc
tcagctagctttattgaaccaaaggctgaggactgcgagacctcaatcatgcaagttaac
caaaacatgctggcatctgttgagatgaagcagcagggttgtcagaccactatgataaag
gtagaatcttgtccagaatattgcactgcccctcagcctccagcagagacaagtaatgat
gtccagaaagacaaaggttgtctcccttcagctcctaaaaacggagagacaccagctctc
actgagaccccgtctggcttggctgtccttaagcagctcctccagaagaggcagcaggga
caggcccttcctctaaaagtagttggaacagacagacatgccgctgccatagctcaggcc
gcagtgctgctaaacccctccgctaaacacactaagcccattagaactccttccactgct
cctcggaaaccccgggtcccaaagtctaccgctcctaaggagaagaagcccagaaacagg
aaaagcaggaccagtagtactcaaccagaccaatcagtgaagcaggacggcagcatgtct
gatgactgccctctcttctcctctgcaccgagcctcgccagctgcaacttcatagaggac
agcttgtccccagagctcccacaggactacaccttcgatataaacactattcaccaagca
gagttctccagtccctacagcggcaatcagtttgttttgactgataaaaacctacctgtc
aagttcctcagtgacatctgccatgaacttccatctgctcaggcgcagggcttggaaggt
ctttctcagagccagaccgagagagactctgctgtgtgcaaagtcaggcctgccagccct
gaactctttgacaggtctgggaatggagagccctcaacaaaccttgctctgcttcaatct
gagaagcacaggccagaaagacaaagagaatgggacctttctttctataaatcccatacc
ctcagcccttttcaagacttccactgtgagagaaaggagttcctcttctcagccttcgac
cccgtcatacctttgtctctaagctcggtgtcgttcgtcgaccaggaaggctcacctact
agcgaacttcacgagagcatcgacggacttacgtccaccacaccgagcagctcccctcac
tcaatcagttctctgtcacatgtgagagcaagccagcttcagcggggcaccggaggtgga
gcccatgtcctcaagcccctcatgtcccctcctagtcgggacgagatcctcagcagtctg
atggacctggagatgtcagaagccacgttccaggagcccttctgcagcgatccctctgac
atcccaaacaagccaatggaggttgggggccgcaagctcaccgtgggaaccagattagtg
agggaactccaagagtttggaggagacctgtctttggagggcctccatttctggaagacc
gccttctgcgtcatgacgcaccccgccaccaccatcacctcctctcagggagcggaggtc
gagcaggcaaaagaagaaaagacagggcttctcgcatcctcagccagcgacaagaaggtc
gtccttctgccctgcaggaacccgccgagccacgagcgcgtgcagctgtggctggaagcc
aggaagcagtacgacagcctgcagaaagagaggagggagccggggaagaagcgggagggg
gcagatgtggagcaggagaaccctgacagaaccaacctgcctaatgtttccagatgcatt
tcagttaacattgaacactatgggaacacttccagtgtgagaactcgcaggagaaagaag
ctcagcctgtccttagccttgtctcctctggtggacaccggccctcggtccaacaccaca
acactgagtccggtttcagatgagagcactgtgagccctcagcctgagaaacaggaggac
gcctccaacacggtgtctccagaatccccagagctgcctccgtggcaggagcctcaccag
ctgagcccatcagcgcctgagcgactcggcagcaagaactcaccagagtcaccatcatcc
aggctccccgattcacaggagagattcggagcggaccagtctccctttcctttccatggt
gcagatgggaacggtggtagcagcaatccacaccgcctacacaccacccccttcttaagg
aaaaggcggaggagcacggaagatctggacccagtctgcagcacgcccataagtgacaag
gatcctgtttctcggagaagaagaagccagaccgatcctttgaggagagtattactgacc
acacaaatgaagaaccagtttgctgctataaatgtgccaaagaaagaacagtctcagatt
gaagggccaagtattgccaactcgtatggcttcaaggtcagcatgcagaatctgcaggat
gccaaagctctgcatgaggtccagtaccttactttaatgggaatggagctccatgctaga
agccgccgggacctggaacctgacccggagtttgacccaatatgtgccttattctactgc
ttgagctccgacgcgcccctgcagggcggagatggcactcagctgacaggtgccatcatg
gtggacaaagaccatgaaagctgtggtcaaggtcccagatcgaaggcaccgctgctggtc
aggtcaggagtctctgggctacaagttacctacgccagggaggagaagatgctgtttcag
gagctcatcgccatcatgagaaggtttgacccagacatcctgctgggatacgaggtgcag
atgcattcatggggctaccttcttcaacgcgccgctgcaataggagtggacctctgccag
cagctgtcacggattccaggtgactccaaggagaaccgcttcgctgccgagagggatgag
tacggagccgacaccatgactgagatcaacatcatcggccgcgtcaccctcaacctgtgg
agggtgatgaagagcgaggtcacgctgaacaactacagctttgagaacgtggccttccac
gtgctccatcagcgcttccccctctacagcccccgcacgctgtccgactggttcgaccac
atcacacacttgcacaggtggaaaatggtggatcattatgtgagtcgtttacacggcacc
atgcagctgctgcagcagcaggacatcattggcagaaccagcgagctggcccggctcttt
ggaatccagttcctccatgttttgactcgaggatctcagtaccgtgttgagtccatgatg
ctccgtgtggccaagcccctgaactacatcccggtgacgcccagcgtgcagcagcgagcc
cagcagagggcgccgcagtgcattcccttggtgatggagcccgagtcccgattctacagc
aactctgtggtggtgctggacttccagtcgctgtacccctccatcgtcatcgcatacaac
tactgcttctccacatgcctcggccacgtggacagcctgggaacaccggatgaatttaag
tttggctgcacctccctgcgggttcctcctgagctcctccaccagctccgtaatgacatc
accgtgtccccgagcggcatcgccttcgtaaagtcgtcggtgcgtaaaggcgtccttcct
agcatgctggaggagatcctgagcaccaggatcatggtgaagcagtccatgaaaagctac
cggcaggacaaggccctgatgaggttgctggacgcccggcagcttggactcaagctcatc
gccaacgtcacctttggctacacctcagcaaactactcaggacgcatgcccagcgtggag
gtgggagacagcattgtccacaaagccagggagaccctggagagagccatcaagctggtc
aacgacaccaagaagtggggagcccgagtcgtgtatggagacacagacagcatgtttgtt
ctgctgaaaggagccaccaaggagcaggccttcaagatcggccatgagattgcagaggcc
gtgaccgcgaccaaccccaaacctgtcaagctcaagtttgaaaaggtgtatttgccctgc
gtgctgcagacaaagaagcgctacgtgggctacatgtacgagagcctggaccaaaaagaa
cccgtgtttgatgccaaagggatagaaacggtgcgtcgcgacggatgccccgctgtttcc
aagattctggagcgctccattaagctgctgtttgagacacgggacatcagtcaggtgaag
cagtttgtccagcgtcagtgtgtgaaggttctggacggccgggctagcatgcaggacctg
acttttgccaaggagtaccgaggcagcggctcataccggcccggagcctgcgtgcctgcc
ctggagctcaccaggcggatgatggcatacgaccggcgcctggagcctcgcgtgggcgag
agagtcccctatgtgatcgtgtatgggatgcccggcgtgcccctcatccagctagtgcgc
cggcccatggaggtgctgctggaccccagcctgcgcctcaactccacctactacatcacc
aagcagatcctgccgccgctgggccgcttgttccagctcatcggagtggacgtgtttgga
tggtaccaggagctccccagaatccagaaagcgtcctgctcctctgcggtagggggcgag
gagcccgctgggaggaagggaaccatttctcagtatttcaccacgctccactgccctgtg
tgtgacgagctgacccagctaggggtgtgcgcgcagtgcagagccgacccccagcgggtg
gctgtgaccctgtaccaggacgtgaggcagtgggagagccagcaggagcagttgctcaag
atctgcaggaactgcagcagctgtactgagcgacatgttccatgtgtgtccctggactgt
cccgtcctctacaagctgtcccgggtcaacaggcagctctccaaggccccatacctccga
cagctactggagcagttctga
DBGET
integrated database retrieval system
