Xiphophorus hellerii (green swordtail): 116735379
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Entry
116735379 CDS
T07363
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
xhe01001
]
116735379 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
xhe04054
]
116735379 (ciita)
Enzymes [BR:
xhe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
116735379 (ciita)
Protein kinases [BR:
xhe01001
]
Serine/threonine kinases: Other
TAF1 family
116735379 (ciita)
Pattern recognition receptors [BR:
xhe04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
116735379 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
nSTAND3
AAA_16
AAA_22
RsgA_GTPase
AAA_30
Motif
Other DBs
NCBI-GeneID:
116735379
NCBI-ProteinID:
XP_032443131
LinkDB
All DBs
Position
16:17648051..17672151
Genome browser
AA seq
1518 aa
AA seq
DB search
MQELLEEVLMDLSYLNQDPLSSLSVYDCTLRSSDEKAELLSGASSEPPSDNESINKGNEE
SQEAWLQQVEESARRIAVPLWQNWDRGRGMLQTLLPCVPSGCSISDRMMLEGEAQSVVLD
MEEEMELAAACSTLDTCVGDFECEELSFACDTDAGRSEREALHFSTLNGVAVFNTDDFRI
LAAARNASPVEACKATEGGYITQMLEGQFDVLCPVGKMADKVDDLFCFTADAPYQQCGTQ
SGLSETTFRDLLHSDVPEDSRTVLQDASLYSLTEILTDYLEDADMYNVDQDREFQEKTDL
HCDAKMQEYDQDSSGLLDLVSGYISDLLWDDDYLASQLDPNVLFSHDLGPDCFDDIIQKS
DTAVALEASDGANHSEQREQRKPTGKIKPERKRQRDALSTQCTDGNSRDSRVKRRKATEP
PKTQEETAEPPAIHDAEAASVPAEPVGCLPTTPPGNLLVFPPQSANSIPIQFITIPDPSA
YKVVQLSSSPPPLIRLPLPNTAATPTYIFVPNPSPTRKRQVPPLSPADGAVAPFLMSSFQ
PGSMSDTASKVTSPTAAPPSPTNEVSPCKESPKSPVVVEIPQAVRDYIQQSKIHMSQTCQ
YMEAGLRLNAHYVNVSVSRREIARSGKNTNRCLDKELIITGDIDLQKSSMGQSQIFDSLN
GKRYNVLFGNAGMGKTTVIKKLCLDWSRDCIPQFDFVFLLDGKQLALTEPVHSLQTLLLS
QSSFAPHCADPEGVYAQILAAPKRVLIVFDGFDELRHYEILLQTQKKELVASLQKDSKAQ
AFTVKQLFSSILQRVLLPGCTLLLATRPRGTASQLLRRADSFLEVCGFTPANVETYVSQY
FSDPELRESALDSLKSSSYLNLLCWNPGLCHLVCTALEQCKSEDALPRTLTALCHKVLCL
KMEKDRGSTESLLEAEKINTAGPVESTDISNNSPGRRVQKNNRTRPRAVACATSGNQRAR
KTKGQKKLDEENVCQDTNRTELLSQLCSIAWEGVKSNSSAVPKGRTVSTKLRAFSLRTGL
LLSQSLMKRTPSRREEMEGGGEVNNGIEEVEDKENKEKGGNPQTSDECEDRILLWANPFL
QSYMAAVHLSLSRTVTDHSFLQTLPFQMGAKGRRKPQREELELTQRIAAGLLFHNRTELQ
SLHSYSEAVFRDMVASKQALVMKHLEGLCFGDLNSTQILEACNYVYEASFTHQESGKDTS
AKMLTRLALNLPELLTFRGVPLNPPDVFTVQNALRMGGAEGRSFCLDLEDTGIQICGLRS
LVALNNINTYRACIADVVTLWEELEKRSDEGLLQGAVSKFKIHPLKATQVCHIEHLERLV
SIHTSKRLSDSSGQSNSLLAEGVPAVKELYKLEFELDPENSPLALPKLWDLLPGLHNLQH
LDVENSKIGDKGAEKLANALVSLRSLEVLNLSENCIGDQGVKKLALALKDLPKLHCLSLY
SNVISDEGAESLAAVLPHMASLTDLDIKYNKMTDIGAQSLGASLRKCSKVKTLRMWNQCI
PYGVFERLKQQDSRILWQ
NT seq
4557 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaattattggaagaagttctaatggacttgtcctacttgaatcaagaccctctt
tcctcactgtctgtgtatgactgcactctcagatccagtgatgaaaaagcagaactgctg
agtggtgcaagcagcgagcctcctagtgataacgaaagcataaacaaggggaatgaggaa
agtcaggaggcgtggttacagcaggtagaggaatcggcaaggaggatagctgttcctcta
tggcagaactgggaccgagggcgagggatgttgcagaccttgctgccctgtgtgccaagc
ggctgttcaataagcgacaggatgatgctagagggtgaagcccagagtgtcgttttggac
atggaggaggaaatggagcttgcagccgcttgcagtacgcttgacacctgcgttggcgac
tttgagtgcgaagagctaagctttgcgtgtgacacagatgcaggcaggtcagaacgagaa
gcgctccacttctctacccttaacggagttgctgtgttcaacacggacgatttcaggatc
cttgcagcagcaagaaatgcctcacctgttgaagcctgcaaagcaacagaggggggatac
atcacccaaatgctggagggccaatttgatgttctgtgtccagtcggcaagatggcagac
aaagtggatgacctgttctgttttacggcagatgcaccatatcaacaatgtggaacacag
tcaggactgtctgaaaccactttcagggacctgctccattcagatgtgcctgaagacagc
agaactgttctgcaagatgcctctctttatagtctcacagaaatattaacagattatcta
gaagatgcagacatgtataatgtagaccaagatagggaattccaagaaaagacggattta
cattgtgatgccaagatgcaagaatacgaccaggactcctcgggcctgttggatttagtt
tcaggttatatatcggaccttttgtgggatgatgactatttagcttctcagctggatcca
aatgtgctcttcagtcatgatctggggcctgactgctttgatgacatcatccaaaagagt
gacactgctgtggcactggaggcctctgatggcgctaaccacagcgagcagagagagcag
cggaagccaacgggcaaaataaaacctgagagaaaaagacagagagatgccctgtctaca
cagtgcactgatggaaattccagagactccagagtgaaaaggcgaaaagcaacagaacca
ccaaaaacccaagaggaaactgctgagccacctgccattcatgatgctgaagcagcgtca
gttccagcagagcctgtgggatgccttcccaccactcctccaggcaacctcctcgtgttc
ccacctcagtcagctaattccattcccattcagttcatcacaatcccagacccctctgct
tataaggtggtccagctttcctcctcccctcctccgcttattcggctcccactcccgaac
acagctgctacgccgacgtacatcttcgttcctaatccctctccgacccgcaaacgccag
gttccaccgctctctccagcggacggtgcagtggcgccctttctgatgagttcatttcag
ccaggttccatgtcggacacagccagcaaagtcacgtcccccaccgcagctcctccgtcc
cccacaaacgaggtatccccatgtaaggagtcgccaaagtcccctgtggttgtggaaatc
ccccaggctgtgagggactacattcagcagtcaaaaatacacatgagtcagacttgccag
tatatggaggcaggcctgaggctgaacgcccattacgtgaacgtgagtgtgagccggaga
gagatcgctcgctctgggaaaaacacgaatagatgtctggacaaggagctcatcataact
ggagatatagacctccaaaagagctccatggggcagagtcagatctttgacagcctgaat
gggaaacgctacaacgtgctgtttggcaatgctggcatggggaaaacaactgtgatcaag
aagctgtgtctcgactggtccagagactgcatccctcagtttgactttgtctttctatta
gacggcaaacagctcgctttaacagagcctgtccacagcctccagacgctgctgctcagt
cagtcctccttcgctccacactgcgcggatcctgaaggagtttacgctcagatcctcgca
gctcctaaaagggtgcttattgtttttgatggatttgatgagctgcggcactacgaaatt
ctgctccagactcagaagaaggagttggtggcctcactgcaaaaagacagcaaagcccag
gccttcacagtgaagcagctgttttccagcattcttcagagggtcctgcttccaggctgc
acgctcctcctcgccacccgcccaagaggcacagcaagccagttgctccgccgcgcggac
agctttctggaagtctgtggcttcactccggcgaacgtggagacgtacgtttcccagtac
ttctccgatcctgaacttagagaatctgctttggactccttaaaaagcagcagctacctg
aatctcctctgctggaacccgggtctctgccacttggtgtgcacagcgttagaacagtgt
aaaagtgaggatgccttaccaagaactttaactgcactctgtcataaggtcctctgcttg
aaaatggaaaaagacagaggaagcacagagtcacttcttgaggctgagaaaataaacacg
gctggacccgtggaaagtacagacatttctaacaattctccagggagaagagtacagaaa
aataatcgcacaaggcccagagcggtagcatgcgctacttctggtaaccaaagagcaagg
aagacgaagggacagaagaaactggatgaggagaatgtttgccaggacaccaacagaaca
gagttgctgtcccagctttgctctatagcctgggagggggtgaaatccaactcatctgct
gttcccaaaggacgaactgtctccaccaaactcagagccttcagcttgaggacgggcctg
ctactttctcagtccctcatgaaaagaacaccttccagaagagaggagatggagggagga
ggagaagttaacaatgggatagaagaagtggaggacaaagagaacaaggaaaagggaggg
aacccacaaacgtctgatgaatgtgaagataggatcctgttgtgggctaatcctttcctt
cagagttacatggctgctgtccatttgtctttgtcaaggactgtgacagaccactccttt
ctccagaccctgcctttccagatgggtgccaaaggccgacggaaacctcagagggaggag
ctggagctgacgcagaggatcgctgcaggcctcctgttccacaacaggacagagctacag
agtcttcattcatactcggaagcagtcttcagagacatggttgccagtaagcaggctttg
gtgatgaaacacctagaaggtctgtgctttggggatttgaattcaactcagatcctggag
gcgtgcaactacgtctacgaagcaagtttcacgcaccaagagagtgggaaggacaccagt
gccaaaatgctgacccgattggcattaaatctccctgaactcctaacattccggggcgtt
cccctcaacccgccggatgtgttcacagtacaaaacgctctcaggatgggtggagctgag
ggcaggagtttctgtttggatctggaagacactgggatacagatctgtggacttagatcg
ctagtggccctcaacaacatcaatacctacagggcctgcatagcagacgtcgtcaccctg
tgggaggagctggagaagaggagcgacgaaggtctcctgcaaggagcggtgtccaagttc
aagatccatcctctgaaagccactcaggtctgtcacatagagcacctggaaaggctcgtc
agcatacacaccagcaagaggctctcggacagctccggccaatcaaattccctcctggca
gaaggggtgccagcagtcaaagagctgtacaagctggaatttgagcttgacccagaaaac
agtcccttggctcttcccaaactgtgggaccttctccctgggctccataacctgcagcac
ttggacgtggaaaacagtaagatcggagacaaaggagcagagaaactggcaaatgcatta
gtctctcttcgctcactggaagtactaaatttgtccgagaactgcataggtgaccagggt
gtgaagaagctagctctcgccttgaaggacctgcccaaactgcactgtttaagtctgtac
agtaacgtgatttctgacgaaggggcagagagtttagcagctgtcctcccacacatggct
tcgcttacagacctcgacattaaatataacaagatgacggatattggagcacaaagcttg
ggagccagtttgagaaagtgctctaaagttaaaactttgaggatgtggaaccagtgtatc
ccatatggagtttttgagagactgaagcagcaggacagccgcatcctctggcaataa
DBGET
integrated database retrieval system
