Xiphophorus hellerii (green swordtail): 116735780
Help
Entry
116735780 CDS
T07363
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03440
Homologous recombination
xhe03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116735780 (top3a)
03460 Fanconi anemia pathway
116735780 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xhe03032
]
116735780 (top3a)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116735780 (top3a)
Enzymes [BR:
xhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
116735780 (top3a)
DNA replication proteins [BR:
xhe03032
]
Eukaryotic type
DNA Topoisomerases
116735780 (top3a)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
116735780 (top3a)
FA (Fanconi anemia) pathway
116735780 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
116735780
NCBI-ProteinID:
XP_032443756
LinkDB
All DBs
Position
16:19200838..19230141
Genome browser
AA seq
1026 aa
AA seq
DB search
MLIAHLLGRSTLRSGLLRARTGFSWATRSRWCSDAAQGADMIRSRAQIRRVLCVAEKNDA
AKGISEIMSGGRARRREGFSKFNKIYEYEYNLFGQNVTVTMTSVSGHLLGLEFKAPFQKW
HSCSPVLLFDAEVEKICPDNMVQIKRTLEKEARQCQALVIWTDCDREGENIGFEIIDVCK
AVKPNLQIFRAKFSEITPNSIRRACETLTEPDCNVSDAVDVRQELDLRIGASFTRFQTLR
LQKIFPESLANQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVLHEVEDDSVEFSW
KRNRLFHHTACLVLYQICMEDPIATVTSVTSKPKSKWRPLPLDTVELEKLASRKLRINAK
ETMKIAEKLYTRGLISYPRTETNIFPANLPLAPLVEQQAQSPEWGTFAQRVLDQPGGPNP
RQGKNSDQAHPPIHPTKYTNTLQGNEARVYEFIVRHFLACVSQDALGHETVVEIEIAQEK
FSTSGLMIIARNYLDVYPYERWSTKLIPVYEQGSQFQPSAIEMVDGQTSPPQLLTEADLI
SLMEKHGIGTDATHAEHIETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKPNL
RAELEADLKLVSEGRKDKRSVLQHHIQKYKAVFIESVRKAKKLDEALSPYLGAALELPDA
EQLDMEVPLPVRKCPNCGRDMVLKKKREGNSRFLACVGFPACKTAVWFPDAVLEVSRDDG
VCPTCQPSPIHLLKFKFRRGSVPPMMPLEFVGCIGGCDETLREVLDLKYLGGGGGRGGGE
GRSRGPGDATGWSGGGGGGDDVPPPRPPRPPQPRPSMPPVPAWTPQPRPPPGGSGVRVEA
SSDVIVCNCGQDALLLTVRKDGLNQGRQFYKCNSGACNFFLWADQPSQQGAPPQSRGPPL
SVQRSPQAPRASLGFGNTSGGGRGHTVCNCNDNAVTRTVQKDGPNKGRMFHTCGKPRDQQ
CGFFQWADENVPPPGGGFNAFNEDGGKTGRKTAGDGAAGRAPAARKPRTCGICHMPGHTR
VTCPQR
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgctgatagcgcacctcctcggcagatccacgcttcgatcgggactactgcgggcgagg
acgggcttttcctgggcgacacggagccgctggtgctcggacgcggcgcagggggcagac
atgattcgcagccgagctcagatcaggcgggtcctctgcgtggccgagaagaacgatgca
gccaaaggcatctctgagatcatgtctggcggcagagccaggaggagagaaggattttcg
aagttcaataaaatatatgagtatgaatataatctttttggccagaatgtgacagtgaca
atgacctcagtgtcaggccatttgctgggtctggagttcaaagcgcctttccagaaatgg
cacagctgcagtcccgtgttgctgtttgatgcagaggtagagaagatttgcccggacaac
atggttcaaatcaagcggactctggagaaggaagcgaggcagtgccaggctctggtcatc
tggactgactgtgaccgggagggagaaaacattggcttcgaaatcattgacgtttgcaaa
gcagtgaaacccaatttgcaaatctttcgagcaaagttttcggagatcactcccaactcg
attcgaagagcgtgtgagacgctgacggagcccgactgcaacgtcagcgacgccgtcgat
gtccggcaggagctggatctgcggataggtgcgtcctttacccggttccagacgcttcgc
ctgcagaagatcttccccgagtctctggccaatcagctgatctcatacggcagctgtcag
tttcccaccctgggatttgtggtggagcgcttcaaagccattcaggctttcatacccgag
actttctacaagatcaaagtgctccatgaggtggaagacgacagtgttgagttcagctgg
aagagaaaccgtctcttccatcacacagcttgtctggtgctctaccagatctgcatggag
gatcccatagcaacagtcacctcagtaacaagcaaacccaagagcaaatggagaccactg
cctttggacactgtggaactggagaaactggcgtctaggaagctcagaataaatgccaaa
gagacgatgaagattgctgaaaagctttatactcgagggttaatcagctatcctcgcaca
gaaaccaacatatttcctgcaaaccttcccctggcgcccctggtggagcagcaggcgcag
agtccggagtgggggacgtttgcccagcgggttctggaccagcctgggggccccaaccca
cggcagggcaaaaactctgaccaggcccaccctcccatacaccccaccaagtacaccaac
acgctgcagggcaacgaagcacgtgtgtatgagttcatcgtgcggcacttcctggcctgc
gtttcccaggacgctttggggcacgagacggtggtggaaatagaaattgctcaggagaag
ttctccacatctggactcatgattattgcaaggaattacctggacgtctacccgtacgag
aggtggagcacaaagctgataccagtttatgagcagggctcccagttccagccctccgct
attgagatggtggacggacagacgagtccgcctcagctgctgaccgaagccgacctcata
tccctgatggagaagcacggcatcggaacggatgcgacccacgcagaacacatcgagacc
attaagagtcgcatgtacgtcggtctgactgcggaccagaggtttctccccggggagctc
ggcatgggactagtggagggttacaactccatgggctacgagatgtcgaaacccaacctg
cgcgccgagctggaggccgacctcaagctggtgtcggagggcaggaaggacaagcggagc
gtactgcagcaccacatccagaaatacaaagctgtcttcatagagtctgtgaggaaggcg
aagaagttagacgaggctctgtcgccgtacctgggcgcagctctggagctgcccgacgca
gagcagctggacatggaggtcccgctgccggtcaggaagtgtcctaactgtgggcgggac
atggtgctgaagaagaagagggagggaaacagtaggtttctggcctgtgtgggcttcccg
gcctgtaagacggccgtctggttcccggacgcggtgctggaggtcagcagggacgacggg
gtttgtcccacatgtcaaccgagccccattcacctgctgaagtttaagttccgcagaggc
agcgttcctcccatgatgcctctggaatttgttggctgcatcggtggctgcgacgagacg
ctcagagaagttttggacctcaagtaccttggaggaggaggaggaagaggaggaggagaa
ggacgaagcagaggaccgggagatgctacaggatggagtggaggaggaggaggaggagat
gatgttccgcctccgaggcctccgagaccgccacagcccagaccctccatgcctcctgtt
cccgcctggaccccccagcccagacctccaccaggtggcagcggcgtccgcgtggaagcc
agtagcgacgtgatcgtctgcaactgcggccaggacgcgctcctcctgacggtgcgcaaa
gacggcctcaaccaaggccgtcagttctacaagtgcaactccggggcctgcaacttcttc
ctgtgggcggatcagccgagtcagcagggggcgccgccgcagagcagagggcccccgctg
tcggtgcagaggtctcctcaggctcccagggcctcgctggggttcgggaacacgtccgga
ggcggcagagggcacaccgtgtgcaactgcaacgacaacgccgtgacccgcacggtgcag
aaggacggccccaacaagggccgcatgttccacacctgcgggaagccgagagaccagcag
tgcggcttcttccagtgggctgacgagaacgtacctccaccaggtggaggatttaacgca
tttaacgaagacggagggaagacggggaggaagacggcgggagacggcgccgccggcaga
gctcccgctgcgaggaaaccgcggacctgcggcatctgccacatgccgggacacacccgg
gtcacctgccctcagcggtga
DBGET
integrated database retrieval system
