Xiphophorus hellerii (green swordtail): 116735840
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Entry
116735840 CDS
T07363
Symbol
rnps1
Name
(RefSeq) RNA-binding protein with serine-rich domain 1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03013
Nucleocytoplasmic transport
xhe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116735840 (rnps1)
03015 mRNA surveillance pathway
116735840 (rnps1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116735840 (rnps1)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116735840 (rnps1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_ACIN1
RRM_7
RRM_5
RRM_3
RRM_MUD2_C
RBD_AKAP-17A
Motif
Other DBs
NCBI-GeneID:
116735840
NCBI-ProteinID:
XP_032443872
LinkDB
All DBs
Position
16:complement(12298396..12301923)
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AA seq
279 aa
AA seq
DB search
MAPSPTKRKEDEKTKDRGKEKTSTKDGDKERGREKVRKRRSASSGSSSSSRSSSSSSSSS
GSSSGSSSGSSSSGSSRTGSSSSRSSSSSSSSGSPSPSRRRHDNRRRSRSPSKTQKRGDD
KDRRKRSPTPKPTKVHLGRLTRNVTKDHIQEIFSTYGKIKMIDMPADRLHLHLPKGYAYV
EFETAEEAAKALKHMDGGQIDGQEISAAAVLTQRVRLPPRRLSPPRRMPPPPPMWRRSPP
RMRRRSRSPRRRSPVRRRSRSRSPGRRRHRSRSSSNSSR
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atggctccatcacccacaaagcggaaggaggatgagaaaactaaagatagaggtaaagag
aagactagtaccaaggatggagacaaggagagggggagggagaaagtgaggaagcgccgt
agtgcttcgtctggtagcagcagcagcagcagatcgagctcatcgtccagcagcagctcg
ggttccagctcaggttcctcaagtggctccagctcttctggctccagccgcaccggatcc
tcaagctctcgttcatcctcctcctccagctcctcaggctccccgagccctagtcgcagg
cgccatgacaaccgtcgccgctcccgctcaccctctaaaacacagaagaggggagatgat
aaagacagaaggaagcgaagccccaccccaaaaccaaccaaggttcacttaggaaggctg
accaggaatgtgaccaaggaccacatccaggaaatcttttctacttatgggaaaataaag
atgatagacatgcctgcagataggctccatctacacctgcccaaaggctacgcttatgtg
gagtttgagactgccgaggaggctgcgaaggccctcaaacacatggacggaggtcagatt
gacggacaggaaatcagtgcagctgctgtgctgactcagcgggttcgtcttccacctcgc
agactgtctcctcctcgccgaatgcccccaccaccaccaatgtggcgtcgcagcccccca
cgcatgagaagaaggtctcgctccccgagaaggcggtcccctgtacgccgccgctctcgc
tccagatcccccggtcgcaggcgccaccgctctcgctccagctccaactcctccagataa
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