Xiphophorus hellerii (green swordtail): 116736083
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Entry
116736083 CDS
T07363
Symbol
rbbp6
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6 isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116736083 (rbbp6)
Enzymes [BR:
xhe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116736083 (rbbp6)
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
U-box type E3
116736083 (rbbp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-C3HC4_2
U-box
zf-C3HC4_3
zf-CCHC_2
zf-RING_5
zf-RING_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
116736083
NCBI-ProteinID:
XP_032444201
LinkDB
All DBs
Position
16:17899989..17918075
Genome browser
AA seq
1664 aa
AA seq
DB search
MAHIHYKFSSKLSYDTVVFDGPNISLTDLKKQIMGREKLRAGDCDLQIINAQTKEEFKED
GGHIPKGSSVIVRRIPLIGAKSSSNSKTNHKERSDVQIPKAFGSHRAISESSSTRALSFF
SKMQMANLAEADVSEEDKIRVMMNQSSCEMMKMNSKLGPTLPENYACYRCGNGGHHIRNC
PGSGDKNFEAPPRIKKSTGIPRSFMVEVDDPNIKGVMLTSCGRYAIPAIDAEAYAVGKKE
KPPFIPQEEPKCEEKEEPIPDELLCLICHDLLSDAVVIPCCGNSYCDDCIRTALLESETH
VCPTCGQSDVSPDTLIANKFLRQAVNNFKKERGSGKIQRTSLSQNTTPKPSPGPTLTAST
LQNKTKKPLQSPCTEQESMVNKPKPEKSPLLSQSAEGRPATPEPSPVENSSESTSTQPEQ
SLEVTSNNEEPEKTPDDLEAVALSGLASNKDLSDAPSQLIPLVNSIEGTEQLQTICVKQS
QPSSDSTTRPSGSSASRDSIMSTFPAGSLTESNSEQHRTRSSSSSYSSLQTTPLPLFRSP
PFHTFVPTHQPLSSYLPGYPPTTPAWKLPIPPGAPLPSLCSSTTSSIPVLIPKEWYRFQR
KKKERSPHKRSFSHSVSKSSKSSRSYSGSSSHSESRSRSRSRHRSPHSSHRAFHSHSNPS
RSFGYKRPRSPTPSSSSSPLSSSHSRSKSSSDHSQKNRHHSRRSGLSSHGSKRRGERSAR
EARKSSGLKGLGDTSCLELERQCYLQWKKEYQEWYDKYFSNYISQFHHLPFPPPPPPPPL
FSQDSFYLKQEGETVRKGDCSPTSEDSNYSGSPPSNSSNDRHSPICHLSSDSCSSPKVND
DHSSPSRCCNDKSPTPSAVQVKLTDNMKENLERDSSLPDSLTKSREEASRQKAKTDDNPQ
TKTKVEDCSTLRNEEKKKKPKKSPSSDFSGSINVLRQDKRRRKTEPNSCEDGSPLRHKGT
VSDSLKSIQPLLKLNQPLYKEKKEKPKDKTKLETQQELRKDKGLNSCQNRERKRKTKPST
DSHMSEVHQHPEGSKTSDSKSEQDKKRQKQDEERNKKHKDLPTKTKSSKCLQPKVAEEPK
SLESESLKSSDRRTQTTEEKKKESEASPLAKKDIWEGGVKVMSQKKISININLDGKRKDE
KTEQNSSGLEICTGERTELSGVTEEKATEESTRTESKENRESSPGVKSQEKILSLLKDIR
ESGNKATSSVDKKDVSMKIPKREEKDRGEKKREDDLDLWHCALEGVEDREQKTGKAEREK
DGCGGHKNILPQLEKGGAGRGNRVEAQKEDNAMRSSSQRSKTKIHRQNETLKHSSSKASL
MSSRGAEGSLEATMAGRKLLEEKLNDQAEVTQNEPTQLNLQVLHSKREKTEKDVTKGEVK
ATLPQASETTTNIESVEDNEQKSLRSTERARDRNRVTVGGRDQEKERNSASSGSYSSVAP
SCGSERERDRERTNERQREGERSKPGVREEERRRDWDAPVSKRTAFNSVSKDTEWRDLLR
ESDQSSSCYSRKPPRSNYVPDQNVAKRHRDASLDINSQNKDRFYDYSYPRQSADYGYKDR
PPGTHHFPPAYSQCRDRGTHSFEPPAFSQRGLTTWEFMQSKNRNEERIQKAEKPGNERKA
AGDEGGGWSRREKNAQRLDERRRSSSSSSSSVYSSASRRSSRDE
NT seq
4995 nt
NT seq
+upstream
nt +downstream
nt
atggctcatattcattataagttttcctccaaactcagctacgacacggtggtttttgat
gggccgaacatctcgctgactgacttgaagaagcagattatgggcagggagaagctcaga
gccggggactgcgacctgcagatcataaacgcacaaaccaaagaagagttcaaagaagat
ggtggtcacatccccaaaggctcctctgtcatagtcaggagaattcccctcattggagca
aagtccagctcaaatagcaagaccaaccacaaagaaagatcagacgtccagattcccaaa
gcctttggatcccatagagcaatcagtgagtccagctctaccagagctttgtcatttttc
tccaagatgcagatggctaacttggctgaagctgatgtctcagaagaggataagatcaga
gttatgatgaatcagtccagctgtgaaatgatgaagatgaactcaaagcttggccctacc
cttccagaaaactacgcctgttatcggtgtgggaatggtggacaccatatcaggaactgc
ccagggagtggggataaaaattttgaggctcctccgaggataaagaagagcacaggaatc
cctcgatccttcatggttgaggtggacgatcctaatattaagggagtcatgctgaccagt
tgtggacgttatgcaattcctgccatagatgctgaggcgtatgctgttggtaagaaggag
aagcctccttttattccacaggaggaacctaagtgtgaagaaaaggaagaacccatacct
gatgaactcctctgtttaatttgtcatgacttgctgagtgacgctgtggtcataccctgc
tgtggaaatagctactgtgacgattgtattcgaactgccttgcttgagtcggagacccat
gtgtgccctacatgtggccaatcagacgtctcccctgataccttgattgccaataaattt
cttagacaggctgtgaataactttaaaaaagaacgaggctcgggcaaaatccagagaacg
tctttgtctcagaacactaccccaaagccaagccctggccccactctgaccgcttccacc
cttcagaacaagaccaagaaacctctccagtcaccctgcactgagcaggagtcgatggtg
aacaagcctaaaccggaaaaatccccactcttatcacaaagcgccgaaggccgcccagca
actccagaaccttcacctgttgagaactcctctgagagtacatcaacccagcctgagcaa
agccttgaagtgacatccaacaatgaggaaccagaaaagacacccgatgatttagaagct
gttgctctgtctggcctggcttctaataaagatttgtctgacgctccctcccagctgatc
ccactagtaaactctattgagggaacagaacagcttcagactatatgtgtcaaacaaagc
caaccgtcttctgattcaaccacaagaccctctgggtcatcagcctccagggacagcatc
atgtccacttttcctgctggaagcctgactgaatctaactcagagcagcacagaactcgc
tcctcttcatcatcatactcttcactgcagaccacacctttgcctctgtttcgctcgccg
ccctttcacacatttgttccaacccaccagcctctcagcagctacctccctggataccca
ccgaccacacccgcctggaagcttccaatcccacctggagccccgctcccatccctctgc
tcctccaccacatcgtctatccctgttttaatcccgaaggagtggtacaggtttcagagg
aagaaaaaagagaggtcgcctcacaaacggtccttttctcactctgtttcaaagtcctcc
aaatcgtcccgctcttactctggatcatccagtcactctgaatcccgctcccgctccaga
tcaaggcatcgctctcctcactcaagtcacagagccttccacagccactccaacccctcc
aggtcttttggctacaaacggcctcgttctcctaccccgtcctcgtcttcttcacctcta
agtagttcccattctagatccaagtcgtcctcggaccacagccagaagaaccgccaccac
agcaggcggtcgggtttgagcagccacggctcgaagaggcgcggggagcgctctgccagg
gaagcaagaaagtcatcaggtcttaagggtttgggtgacacaagttgcctggagctggag
aggcagtgctaccttcagtggaagaaggagtaccaagaatggtatgataaatacttcagt
aactatatcagccagtttcaccatctgcctttccctcccccgcctccaccgccaccactg
tttagtcaggactctttctacctaaaacaagagggagagacggtgaggaagggcgactgc
tcgcctacatctgaggactctaattacagtggctctcctccctctaattcctcaaatgac
cgtcactccccgatatgtcacctctcaagtgacagctgttcatcccctaaagtcaatgac
gaccattcttcaccctctcgttgttgcaatgacaaatcccccacgccatcagcagtccag
gttaagctgacggacaacatgaaggagaacctcgagagggatagcagtctaccagactct
ctaacaaagagcagagaggaagcaagtcgacaaaaagcgaaaacagatgacaatccacaa
acgaagacaaaggttgaagactgcagcaccctgagaaatgaggagaagaagaaaaaacca
aagaagtcgccatcttctgacttttctggctccataaatgttctcaggcaagacaagagg
aggcgcaaaactgaaccaaacagctgcgaggatggctcaccgctacggcacaaagggact
gtcagcgactccttaaaatcaatccagcctcttctaaaactaaatcaacctctatacaaa
gaaaagaaagaaaaacccaaagacaaaactaaattagaaacacagcaagagcttagaaag
gacaaaggtttgaactcttgtcaaaacagagagagaaaacgcaaaacaaaacccagcaca
gattcacatatgtcagaagtgcaccagcaccccgaaggcagcaagacgtctgactcaaaa
tcagagcaggacaaaaagagacagaaacaggatgaggagagaaataaaaaacacaaggat
cttcctactaagactaaaagtagcaaatgcctccaacctaaagttgcagaagaacccaaa
agccttgaaagtgaatccctgaagtcgtctgacagacgaacgcaaactactgaggagaag
aagaaagagagtgaagcatcacctctggctaaaaaagacatctgggaaggaggggtaaag
gtaatgtctcagaagaagataagtatcaatatcaacttggatgggaaaaggaaggatgag
aagactgaacagaactcttctggtttggagatctgtactggcgagaggacagagctgtca
ggagttacagaggagaaggctacggaagaaagtacaagaactgaatcaaaagaaaacaga
gaatcaagccctggagttaagtcacaggagaaaatattatctcttttaaaagatattaga
gagtcaggaaacaaagctacctctagtgttgacaagaaggatgtgtctatgaaaatccct
aaacgggaagaaaaggacaggggggagaagaaaagagaggatgacttggatttatggcac
tgtgcacttgaaggagtggaggacagggagcaaaaaacaggaaaggcagagagagaaaaa
gatggctgtggaggtcacaagaatatcctacctcagctagagaaaggtggtgcaggcaga
ggaaacagagtcgaagcacagaaagaagacaacgccatgagatcgagctcacagagaagc
aaaacaaaaatccatcgacagaacgagactttaaagcacagcagcagtaaagcctcttta
atgagcagccgtggtgctgaaggcagcctggaggcgacgatggcggggagaaaacttctg
gaagagaaattaaacgaccaagctgaagtcacacagaatgaacccacacagctgaatcta
caggtgcttcactccaagcgggagaaaactgaaaaagatgtgacgaaaggagaagttaag
gccactctgcctcaggcgtcagagacgacaaccaacatcgagtcagtggaagacaatgaa
cagaagagtctcagatcaacggagcgagcgagagacaggaacagggtgaccgtgggaggc
agagaccaggagaaggagagaaactctgcctcttctgggtcatactccagtgtggctccc
tcttgtggcagtgagagagagagggacagagagagaactaatgaaagacaaagagagggc
gagaggtcaaaaccaggagtgagggaagaggaaaggaggagagactgggatgccccggtg
tcaaagagaactgcgttcaactcggtttcaaaagatacggagtggagagacctgctgaga
gagagtgaccagagttcttcttgttatagcagaaaacctcccagatccaactacgtgcct
gatcaaaatgtagctaaaagacacagagatgcatccttggatattaatagtcaaaacaaa
gaccgtttctacgactacagttatccccgtcaatctgcggactacggctataaagacaga
cctcctgggactcatcacttcccacctgcttacagccagtgtagggacagaggcacacac
tcttttgagccacctgcattctctcaaagaggcctcaccacctgggaattcatgcaaagc
aaaaacagaaatgaggaaaggatacagaaagcagagaaaccgggaaacgaaaggaaagct
gctggagatgagggaggaggatggagtcggagggagaaaaacgcccagagactggacgag
cgacgcagatccagcagcagtagcagcagcagcgtctattcctcagcaagccgcaggagc
agcagggacgaatag
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integrated database retrieval system
