Xiphophorus hellerii (green swordtail): 116736111
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Entry
116736111 CDS
T07363
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116736111 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116736111 (xab2)
03041 Spliceosome [BR:
xhe03041
]
116736111 (xab2)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116736111 (xab2)
Spliceosome [BR:
xhe03041
]
Complex B
Other components
Prp19-related factors
116736111 (xab2)
Complex C
116736111 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
NRDE-2
TPR_MalT
SNAP
TPR_1
Motif
Other DBs
NCBI-GeneID:
116736111
NCBI-ProteinID:
XP_032444277
LinkDB
All DBs
Position
16:complement(9729206..9737850)
Genome browser
AA seq
847 aa
AA seq
DB search
MPSLNGKADVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITDPTYEEVNNCHERALVFMHKMPRIWIDYCQFVVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVHNLPLPETALRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAIVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQEEEDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSKKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIVINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCMRFADMECKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKASTSSTGTISDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEINIDEDEDDDDQEPDEVQLEQKSVPTAV
FGGLKED
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgccttccctaaatggaaaagctgacgttatatttgaggatgatgatcttccttatgaa
gaggagatcatcaggaatccatactcagtcaagtgttggatgcgctacattgaattcaaa
cagaatggagccaaatccaccctgaacatgatatatgaacgggctctgaaggaattgcct
ggaagctataaattgtggtacaattatctgagagaaaggaggaaacaagtcaaaggaaaa
tgcattacagatccaacatatgaagaggtcaataactgccacgaaagagcacttgtgttt
atgcacaagatgcccaggatatggattgattactgtcagttcgtggtgtcacagtgtaag
atcacgagaagtcggagaacgtttgaccgggctctgagagcactacctgtaacccagcac
ccacgaatctggcctttgtatctgcgtttcgttcacaacctgcccctgcctgaaacagcc
ctgcgggtatatcgaaggtaccttaagctatctccagagaacgcagaagagtacatagac
tacttgcggtctgttggtcgcttggatgaagcagctgtgcgattagcagcaattgtaaac
gatgaaagctttgtgtccaaagagggcaagtccaactatcagctgtggcacgagctgtgc
gacctgatctctcagaatcctgataaagtgacctctttaaatgttggagccatcatacga
ggtggcctcacacgctttacagaccaacttggaaaactttggtgctctttggctgattat
tacatcaggagtggtcactttgagaaagcacgggatgtgtatgaggaagccatacttact
gtagtaactgtgagggatttcactcaagtgtttgatagctatgctcagtttgaggagagc
atgattgctgcaaagatggagaccactgctgagatgggacaagaggaggaagatgacata
gacctggagcttcgtctggcccgctttgagcagctaattgcccggcggccacttctgctc
aacagtgtattgttgaggcagaatccccataatgtgcacgagtggcacaagcgagtaaaa
ctttatgaaggaaatccacgacagatcatcaatacatacactgaggcagtacagacagtg
gatccaatgaaggccactggaaaacctcattctctctgggtttcttttgctaaattctat
gaggaaaatgaacagctggatgacgccaggacaatctttgagaaggctactaaagtaaac
tacaaacaagtggatgaccttgctgcagtttggtgtgaatatggagagatggaacttcgg
catgagaattatgatcaggcactacgcatactgaggaaagctacagcaatcccatctaag
aaagcagagtactttgattcatctgagccagtccagaacagagtgtacaagtctctgaag
gtctggtctatgctggcagacctcgaggagagtctcgggacttttcagtctacaaaagca
gtgtatgaccgcatcattgatctacgcattgccactcctcaaattgtcatcaactatgcc
atgttccttgaagaacacaactactttgaggaaagctttaaagcatatgaacgagggatc
gctctcttcaagtggccaaacgtttatgacatctggaacacttaccttaccaagttcatt
gaccgttatggcggcaaaaaattggagcgagccagagatttatttgaacaagccctggat
ggctgccctgccaagtttgccaagaccatttatctgttgtatgccaaactggaagaggag
tatggattggcacggcatgccatggctgtctatgaaagagcaacacaagcagtggaaact
gaagagagacaccatatgtttaacatttacatcaagagagcagctgaaatttatggcgtt
acgtacaccagagctatttaccagaaggctattgaggttcttcctgatgagcatgcgagg
gatatgtgtatgcgatttgctgacatggagtgtaaacttggggagattgaccgtgccaga
gcaatctactcctactgctctcagatctgtgacccaagggtgacagcaaatttctggcag
acctggaaggaatttgagattcgccatggaaatgaggatacaattagggagatgttgaga
atcaagcgcagtgtccaggctacatacaacacccaggtcaactttatgtcctcgcaaatg
ctgaaggcttcaacaagctctacaggcactatttcagatcttgctcctggccagatggga
attgatgatatgaaaatgttggagcagaaagctcagcaacttgctgcagaagctgagcag
gacaaacccaaacccaaggagaaaattctgtttgtcaggagtgatacttctcgtagtgag
ttggctgagctttccaaacaagccaatcctgatgagataaatattgacgaggatgaagat
gatgatgaccaagaacccgatgaggtgcagcttgagcagaagagtgttccaacagctgtc
tttggaggtcttaaagaggactga
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