Xiphophorus hellerii (green swordtail): 116736137
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Entry
116736137 CDS
T07363
Symbol
smarca4
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116736137 (smarca4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116736137 (smarca4)
03036 Chromosome and associated proteins [BR:
xhe03036
]
116736137 (smarca4)
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116736137 (smarca4)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
116736137 (smarca4)
Chromatin remodeling factors
BAF complex
116736137 (smarca4)
PBAF complex
116736137 (smarca4)
GBAF(ncBAF) complex
116736137 (smarca4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
116736137
NCBI-ProteinID:
XP_032444325
LinkDB
All DBs
Position
16:complement(21151518..21175176)
Genome browser
AA seq
1634 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGGIMGPSPGPSPGSAHSMMGPSPGPAGSGHPHPPQG
PSGYPQDNMHQMHKPMDPMHDKGMPDDPRYGQMKGMGMRPGGHSGMGPPPSPMDQHSQGY
PSPLGGSEHAPSPVPANGPPSGPGAGPMEGSGDPAQSMGQPNRAGPPGPSGPPGPGVVPG
AAGGPTPFNQNQLHQLRAQIMAYKMLARNHPIPEHLQLAVQGKRPMPGMQQQQPPPMPNM
PPSAGPGGGPPAGPGSGPGPVPVPGPAQTNYNRPHGMVGPNMAPPGPAGVPPAMQGQPAN
GPPKSWPEGPMVNAAAPSNPPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPAQ
LPPMMLHQKQNRITPIQKPHGLDPVEILQEREYRLQARIVHRIQELEHLPGSLAGDLRTK
ATIELKALRLLTFQRQLRQEVVACMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQ
QKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSITAKIQKATKAVTTYHANTEREQKKEN
ERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAAQALKE
KKKKKKKKKPDAIEGGAPAMGPDGEPLDETSQMSDLPVKVIHVDSGKILTGVEAPKAGQL
EAWLEMNPGYEVAPRSDSEDSGSEDEEEEDEDDAEDQPQPTTAPTEEKKKIPDPDSEDVS
EVDVQHIIEHAKQDVDDEYGSASFNRGLQSYYAVAHAVTEKVDKQSSLMVNGMLKQYQIK
GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMELKRINGPFLIIVPLSTLSNWVY
EFDKWAPSVVKVSYKGSPQARRSFVPILRSGKFNVLLTTYEYIIKDKQILAKIRWKYMIV
DEGHRMKNHHCKLTQVLNTHYLAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFE
QWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDM
SALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFS
EHLGFSGGIVTGPDLYRASGKFELLDRILPKLRATKHKVLLFCQMTSLMTIMEDYFGYRN
FKYLRLDGTTKAEDRGMLLKTFNDPASEYFVFLLSTRAGGLGLNLQSADTVIIFDSDWNP
HQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSG
CERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARSEEEFELFMRMDLDRRREDARNPKR
KPRLMEEDDMPGWILKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIE
EGNLEDIEEEVRHKKTTRKRKRERDHDSSPATPSSSHRGRDKDDSGKKAKKRGRPPAEKL
SPNPPSLTKKMKKTVDAVVKYKDGNGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKE
RIRSHKYRNLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKDDESEG
EESEEEEEEMDEGSESESRSVKVKIKLSRKDKGDRGGKGQRRRGRGSRAKPVVSDDDSED
EQEEERSASGSEDD
NT seq
4905 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacccccgacccaccgatgggagggacgccgcggcccggtccctccccgggcccg
ggaccatctccaggaggcataatgggccccagccccgggccctcgccgggctcggcccac
agcatgatggggcccagcccagggccggccggctctggccacccccaccccccacaggga
ccctcaggatatcctcaggacaacatgcaccagatgcacaaaccaatggaccccatgcac
gataaggggatgcctgatgaccctcgctatggtcagatgaagggtatgggcatgaggcct
ggtggacacagcggcatgggaccgccccccagcccaatggaccaacattcccagggatac
ccctctccgttgggcggctcggagcacgcgcccagccccgtcccggccaatggccccccc
tccggccccggagccggtcccatggagggcagcggggaccccgcccagagcatgggccaa
cccaaccgggccgggcccccgggtcccagtgggccaccggggccgggggtcgtaccgggc
gccgccggcggacccacccctttcaaccagaaccagctgcaccaactcagggcccagatc
atggcttacaagatgctggcgcgcaatcacccgatcccagagcacctgcagctggctgtg
cagggcaagaggcccatgcctgggatgcagcagcagcagccgccccccatgcccaacatg
ccgccctccgccgggcctgggggcggcccacctgcggggccgggatcaggaccaggacca
gtaccagtaccgggaccagctcagaccaactacaacagacctcatgggatggtaggtccc
aacatggcgccacccggacccgcaggagttcctcctgctatgcaaggccagcctgccaac
ggaccacccaaatcatggcctgaaggaccaatggtgaacgccgctgccccatccaatcct
ccccagaagttgattcccccccagcccaccggcagaccctcacccgccccgccgtccgtg
cctccagctgcctccccagtgatgcccccgcagacgcagtcgccggggcaaccggcgcag
ctccctcccatgatgctgcaccagaagcagaaccgcatcacgcctatccagaagccccac
gggctggacccggtggagatcctccaggagagagagtacaggctacaagctcgtattgtt
caccgcatccaggagctggagcatctgcctggctcacttgccggtgatctgaggacaaag
gccaccatcgagctcaaggctctgaggctgcttacgttccagagacagctgcgtcaagag
gtggtggcttgcatgcgtcgggacacagctttggaaaccgccctgaacgccaaagcctac
aagcgcagcaagcgtcagtctctacgagaggcccggatcacagagaagctggagaaacag
cagaagatcgaacaagagcgaaagcgtcgccagaaacaccaggaatacctcaacagcatc
ctgcagcatgccaaggactttaaagaataccaccgctccatcacagccaagatccagaag
gccaccaaggctgtgactacctatcacgccaacaccgagcgtgagcagaagaaggagaat
gagcgcatcgaaaaggagagaatgcggaggctgatggctgaggatgaggagggctaccgg
aagctcatcgaccagaagaaagacaaacgcctggcctacctactgcagcagaccgacgaa
tacgtggccaacctcaccgagttggtgcgcgcccacaaggcggcacaagctctcaaggag
aagaaaaagaagaaaaaaaagaagaagccagacgccattgaaggcggtgcgcctgctatg
ggacctgatggagagcctctagacgaaaccagtcagatgagcgacctgccggtgaaggtc
atccacgtggacagcggaaagatcctgacaggcgtcgaggcacctaaggctggccagttg
gaagcctggttggaaatgaaccctggctacgaagtggcgccgcgttcagacagcgaggac
agcggttcagaagacgaagaggaggaagatgaggacgacgcagaggaccagcctcagcct
acgacagctccaaccgaggagaagaagaagattccagaccccgacagcgaagacgtttcg
gaagttgacgttcagcacatcatagagcacgccaagcaggacgttgacgacgaatacggc
agcgccagcttcaaccgaggcctgcagtcgtactacgccgtggcacacgccgtcaccgag
aaagtggacaagcagtcctctctgatggtcaacgggatgctcaagcagtaccagattaaa
ggtctggagtggctggtgtcgctttacaacaacaacctgaacggcatcctggccgacgag
atgggcctggggaagaccatccagaccatcgccctcatcacgtacctcatggagctcaag
cgcatcaacgggcccttcctcatcatcgtaccgctctcgactttatcgaactgggtgtac
gagtttgacaaatgggccccgtcagtggtgaaagtctcctacaagggctccccgcaggct
cgccgctcgtttgttcccatcctgcggagcgggaagttcaacgttctgctcaccacgtac
gagtacatcatcaaagacaagcagatcttagccaagatccgctggaagtacatgatcgtg
gacgagggccaccgcatgaagaaccaccactgcaagctgacgcaggtcctgaacacgcac
tacctggcgccgcggcgcctcctgctgacggggacgccgctgcagaacaagctgcctgag
ctctgggccctgctcaacttcctgctgcccaccatcttcaagagctgcagcaccttcgag
cagtggttcaacgctccgttcgccatgaccggggaaaaggtggacctgaacgaagaggag
accatcctgatcatccgacgtctgcacaaggtgctccgcccgttcctgctgcgccggctt
aagaaagaggtggaggcccagctgccagagaaggtggagtacgtgatcaagtgcgacatg
tcggctctgcagagagttctgtaccgccacatgcaggctaaaggcgttctgctgaccgac
ggctcggaaaaagacaagaagggtaaaggcgggacgaagaccctgatgaacaccatcatg
cagctgaggaagatttgcaaccacccctacatgttccagcacatcgaggagtccttttcc
gagcacctcggcttttccggaggaatcgtgactggccctgatctgtaccgtgcctcgggc
aagttcgagctgctggatcgcatcctgcccaagctgagagccaccaaacacaaagtgctg
cttttctgccagatgacgtcgctcatgaccatcatggaggactacttcggttaccgcaat
ttcaaatacctgcgtttggatggaaccaccaaagcagaagaccgcggcatgttgctgaaa
accttcaacgacccggcctcggagtactttgtgttcttgctgagcaccagggcaggaggc
ctggggctgaacttgcagtctgccgacaccgtcatcatcttcgacagcgactggaaccct
caccaggaccttcaggctcaagacagagcgcaccgcatcgggcagcaaaacgaggtgcgc
gtgctccgcctttgcaccgtcaacagcgtggaggagaagatcctggcggcggccaagtac
aagctgaacgtggaccagaaggtcatccaagccggcatgttcgaccagaagtcctccggc
tgcgagcggcgggccttcctgcaggccatcctggagcacgaggagcaggacgaggaggag
gacgaggtgccagacgatgagaccgtcaatcagatgattgcaagaagtgaagaagagttt
gagcttttcatgcgaatggacctggacaggcgccgcgaggacgcccgcaaccccaagagg
aagccgcgcctgatggaggaggacgacatgccaggctggatcttgaaggacgacgccgag
gtggagaggctgacctgcgaggaggaggaggagaagatgttcggccgcggctcccgtcag
cgcaaggaggtggactacagcgactcgctgaccgagaagcagtggctcaaggccatagaa
gaaggaaacctggaggacatagaggaggaggtgcggcacaaaaagacgaccaggaagcgc
aagagagagcgcgaccacgacagcagcccggccacgcccagctccagccaccgcgggcgg
gacaaggacgacagcgggaagaaggccaagaagcgcggccggccgccggcagagaagctc
tcccccaacccgccgtccctcaccaagaagatgaagaagaccgtcgacgccgtcgtcaaa
tacaaggacgggaatggccgccagctgagcgaagtcttcatccagctgccgtctcggaag
gagctgccggagtactacgagctgatccgcaagccggtggacttcaagaagatcaaggag
cggatccgcagtcacaagtaccgcaacctcaacgacctggagaaggacgtgatgctgctg
tgtcagaacgcccagacctttaacctggagggctctctgatctacgaggactccatcgtg
ctccagtctgtcttcaccagcgtgaggcagaagatcgagaaagacgacgagagcgaggga
gaggagagcgaggaggaggaggaggagatggacgaaggctccgagtctgaatctcgatcg
gtgaaggtgaagatcaagctgagccggaaggacaagggcgaccgagggggcaaaggtcag
aggcggaggggccgcggctcccgggccaaacccgtcgtcagcgacgacgacagcgaggac
gagcaggaggaggagcgttcagccagcggcagtgaggatgattga
DBGET
integrated database retrieval system
