Xiphophorus hellerii (green swordtail): 116736181
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Entry
116736181 CDS
T07363
Name
(RefSeq) contactin-1a-like isoform X1
KO
K06759
contactin 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
116736181
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xhe04515
]
116736181
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
xhe00537
]
116736181
Cell adhesion molecules [BR:
xhe04515
]
Immunoglobulin superfamily
Contactins
116736181
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
xhe00537
]
Others
116736181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
fn3
V-set
Ig_DSCAM-DSCAML_C
Ig_5
Ig_4
C2-set_2
Pur_ac_phosph_N
Ig_6
Big_3_4
Motif
Other DBs
NCBI-GeneID:
116736181
NCBI-ProteinID:
XP_032444389
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All DBs
Position
2:22350263..22426576
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AA seq
1067 aa
AA seq
DB search
MRKQSTKTLRKPGGPAHVSSTRFLAVTPPGGSRFNTMLHLALLLHLLAFSLADSSEQGTV
LDPLEADDATGFGPVFEEQPVDTIYPEEAPEARIVMTCQARANPPATYRWKLNNTDVDLS
KPGSSYSLSGGNLIISNPVRSEHVGKYSCLATNMYGTVVSQEASVQFGYLDLFSPEERQA
VHVKEGQGAVLLCAPPPHYPGELSFRWILNEFPTFIPLDKRRFVSQITGNLYISKVESSD
RGNYSCFTSSPSISKSVFSKFIPLKPLAERSIRKYPADLSVKFPHSTALVGQDIILECFA
LGNPVPEIHWRRKGKILPHNHEVRMAGAQLFIPNVQFNDSGVYICEAANHKGKDSHHANV
SVEAHPEWVEHIVNTEKDLFSEYTMSCIAKGVPKPQIRWLKNGEPLDGTELRFSRLTSDD
AGMYQCRAENRHGVIYANAELRVFFGAPKFPHNHVRRVLAPKNGRVVIECKAKAAPKPTI
TWSKDTELLSNSSRMFIWEDGSLEILNVTPQDEGRYTCFAENDWGKANSTRPLVVTESTK
ITLAPSNADVHIGDNTWMECAASYDPMVDITFVWSLNGQEIDLDKDSTHYESTLNGSSNA
KLLIKNAQLKHAGRYTCTAKTHVDNTSASAHLVVRGPPGAPGGVRIVDRSDKSVTLQWSR
GADNHSPISKYTIQYRDEFLKDIWKNATTSPADVEGNAESAKVVDLFPWTEYEFRVTATN
TLGTGEPSRPSSKEKTLESVPVVAPSDVGGGGGASRELTITWTPVQPQYYYGPNFGYIVA
FKPHEEKQWNRVAVPGPEAKHYVHKDPNLAPMTQFEVKVKAFNRQGEGPYSLTTIIYSSQ
DAPSEPPVILEAKALSATAASVSWMLLSENNTDGYQVKYWRPNEDSEGGALWVGVSGKEN
HTRLEGLKPSSDYMIEIRGYNSAGYGPPSNHIKIHTKKPPPDRPPKILDAKIKGEYVNVA
WEPVVPLSNESLIENYKVLYKQKGMPTGTLYSTNKRFIELPLRTDGEYVVEVRAHTEGGD
GAVAQISAPPGNSQTRGRTQNYSGAIMSSSSLNVLPMLLVALLLLNL
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgcggaaacaaagcactaagaccctcagaaaaccagggggtcctgctcatgtttcatcc
accaggtttctagctgtgaccccaccaggtggttctcgcttcaacaccatgctgcacctc
gccctgctccttcatctcctggccttctcgctcgcagattcatcagagcaagggactgta
ctggaccctttggaagcagatgatgccacaggtttcggcccggtgtttgaggagcagccg
gtggacactatctaccccgaggaggcgcccgaggccagaattgtcatgacctgccaggcg
agagccaatccacctgccacatacagatggaagctgaacaacacggatgttgacctgagc
aaacctggcagcagctacagtttatcgggaggcaacctgattatcagcaaccccgttaga
tcggaacacgtggggaaatactcctgcttggctaccaacatgtacggcacggtcgtcagc
caagaggcgtctgtccagttcggatatctcgatcttttttcaccggaagagaggcaggca
gtgcatgttaaggagggccagggggccgttctgctctgcgccccccctccacattatcca
ggcgagctgtcgtttcgatggatcctcaatgaattccccactttcatcccactggacaag
cggcgctttgtctcccagataaccggcaacctttacatctccaaggtggaatcgtcggac
aggggcaactattcctgcttcacgtccagcccatccatctccaagagcgtgttttccaaa
tttattcccctaaagcctcttgctgaacgttccatcagaaaatatcctgctgacctcagt
gtaaagttcccacactccactgcattggtgggacaggacatcatcttggaatgctttgca
ttggggaaccccgtacctgagattcactggaggaggaagggcaaaattttaccacataat
catgaggtgcggatggcaggtgctcagctgttcatcccaaatgtccaattcaatgacagc
ggcgtctatatttgtgaagcggctaaccacaagggaaaggactctcaccatgctaacgta
tctgtggaggcacatccagagtgggtggagcacattgtcaacacagagaaagacctgttc
agcgaatacaccatgtcttgcattgccaaaggtgttccgaaacctcaaatccgctggttg
aaaaatggagaaccgcttgatgggaccgagttgagattcagcaggctgacatcagacgat
gctggaatgtaccagtgcagagcagagaatcgccacggagtcatttatgccaacgcagag
ctaagagtgttttttggggctccaaagtttccccataaccatgtaagaagagtgctggca
ccaaaaaatggccgggtggttattgaatgcaaagccaaagccgccccaaagcccaccata
acctggagcaaagacacggagctgctctccaactcctccaggatgttcatctgggaggat
ggcagcctggagatccttaatgtgacgccccaagatgagggaaggtacacctgttttgcg
gagaacgactggggaaaggccaacagcacgcgccctctggtggtcacagagtccacaaag
atcacgctggctccctcgaacgctgatgttcacattggagacaacacctggatggagtgt
gcagcatcgtatgacccaatggtggacatcacctttgtctggtccctgaatggacaagaa
attgatttggacaaagatagcacacattatgaaagcaccctgaatggaagttcaaacgct
aaactactcatcaaaaatgctcaactgaaacatgctggacgctacacctgcactgcaaaa
acccatgtggacaacacctccgcttcagcccacctggttgtcagggggccccctggtgca
ccaggtggggtgcgaatagttgacagatcggacaagagcgtcacgctgcagtggagccgt
ggagcagacaaccacagccccatctccaaatacaccatccagtaccgagacgagttcttg
aaagacatctggaagaatgccacaacatctcctgctgatgttgaggggaatgcagaatca
gccaaagtggtggatttgttcccttggacagaatatgagttcagggtcacggccaccaac
actctggggacaggagagccaagcaggccgtcaagcaaagagaaaaccctggaatcagtt
cctgtggtggcgccctcagatgtcggcgggggcggcggggccagcagagagctgaccatc
acatggacgccagtgcagccacagtactattatggacccaattttggctacattgtggcc
tttaaaccccatgaagaaaagcagtggaacagggtggcagtaccgggaccggaggccaag
cattatgttcacaaagaccccaacctcgctcctatgacacagttcgaagtcaaagttaaa
gccttcaacaggcaaggagaaggaccctacagcttaacaaccatcatttactcctcacag
gatgctccatctgaacctccggtgattcttgaagcgaaagcactttctgccacagcggcc
tctgtctcctggatgcttctgtcagagaacaataccgatggataccaggtgaagtactgg
agacctaatgaagacagtgaaggtggagcgctctgggtcggggtgtcagggaaggaaaac
cacaccaggctggagggtctgaagcccagctcagactacatgattgagattcgaggctac
aactctgcgggttatggaccacccagcaaccacatcaagatccacaccaagaaaccccct
ccggatcgacctccgaagatattagatgcaaagataaaaggcgagtatgtgaatgttgcc
tgggaaccagtggtaccactttctaatgaatccctaatagaaaactacaaggtcctgtac
aagcagaaaggcatgccaacaggcacgctgtactcaaccaacaagcgcttcattgaactt
cccctgcgtacagatggggaatatgtggtggaagtccgcgcgcacacagagggaggagac
ggcgctgtggctcaaatcagcgccccccctggaaacagccagacccggggtcgcactcag
aactacagtggagcaatcatgtcctcttcatctctcaacgtcctcccaatgctcctcgtg
gctctcctccttctgaacctctga
DBGET
integrated database retrieval system
