Xiphophorus hellerii (green swordtail): 116736410
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Entry
116736410 CDS
T07363
Symbol
blm
Name
(RefSeq) Bloom syndrome protein isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03440
Homologous recombination
xhe03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116736410 (blm)
03460 Fanconi anemia pathway
116736410 (blm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xhe03032
]
116736410 (blm)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116736410 (blm)
Enzymes [BR:
xhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
116736410 (blm)
DNA replication proteins [BR:
xhe03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
116736410 (blm)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
116736410 (blm)
Bloom's syndrome complex (BTR)
116736410 (blm)
FA (Fanconi anemia) pathway
116736410 (blm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
BDHCT
BLM_N
Helicase_C
RecQ_Zn_bind
HRDC
RQC
ResIII
Motif
Other DBs
NCBI-GeneID:
116736410
NCBI-ProteinID:
XP_032444732
LinkDB
All DBs
Position
2:complement(10072312..10082642)
Genome browser
AA seq
1398 aa
AA seq
DB search
MSSLPQNNLKEQLARHNNAAHSKLSLAKPKTGAFSFKKQSSSGTTKVEYPTKVNSPNILA
NRNVNVQGNSLLTKSSLTFSNKLERTQKSKINNFFSPSTNSKSNFSLAGNSTSACQAPPA
DTGGKVIAAPAKPDNPSSCGGKGNSSTGLDLSDLPFDDWDDFEDFETPTKTKNDSLCSEK
SVRVTKTVSSSDEEFPEFTGKQSHGHLKSELSKKNREQSCMEKEEPEPGVGKTAVSLEPS
LVDGLPEDEVEDTPVKRTRRRCPPPHVTSVLSDSDEEIRTMSEPLKDKTDEKAKWIDPKV
IKLNDNSEPTEDVDYIPDSPPPDETFYRPSSAETRRTHSGIVQSRDKLFQSNIPAATLLE
PSNNLSSDKTKEQLFSIMESICTLVDSIPEHELIALTCGNELLLKRAYRKRILACGVDSL
RMPQPDSTVISDTSYKETFSSCSASSLTSPSSSLFLDTKKPLNSQRLSVISVDYDSDYLD
SASLKPWNKTESSICDSPSAQSFTKPHFSLSEKTSSDVNDTDLFFSAKKLEDEQLKSKTP
THAITADFEADDFDVDDFDIDDFNDSDIPDYFDEPPTSSMLSENPNTTCAAVTKGGPNKS
PWDKKPVTPVSTPKPQKIYSPEPNFKNPAHDRFRGFDFPHSQEMMKIFHKRFGLHQFRFN
QLEAINATLLREDAFVLMPTGGGKSLCYQLPACLSSGVTVVVSPLKSLIVDQIQKLTTLD
IPATSLSGDKSDSEAGRIYMQLSRKDPIIKLLYATPEKVSASNRLISALQNLYERGLLAR
FVIDEAHCVSQWGHDFRPDYKKLHELRQKFPNIPMMALTATATPRVQKDILNQLNMSKPQ
VFTMSFNRTNLKYAVLPKKPKKVDEDCISWIKKHYPRDSGIVYCLSRNDCDALAESLKRA
GIQALSYHAGLSDGNREYVQSKWINQDGCQVICATIAFGMGIDKPDVRYVIHASLPKSME
GYYQESGRAGRDGEISHCILFYSYTDVHRIKRIISMDQEGNKHSKTTHYNNLHSMVHFCE
NVMDCRRIQLLAYFGELKFNRNFCKDHPDVSCDNCAKPNEYKLRKVTDDVKKIVRFVEEN
CEKVGARFGKTPQQNRLTLNMLVDIFIGAKSAKIQTGMFGMGAAYSRHNADRLFKKLVLD
NVLVEDLYITNNGQAVSYISAGPKAMNILSGHMEVEFYETESASSIRKQRAAVKSISKRE
EMVQNCLKELIDLCKQLGKAFGLHYYNIFSTATLKKISEKLSSDPEALLQIDGVTEDKLE
KYGAEVIKVLQKYSEWQLPVDEQTESAGNSWIDTRRTEDDDTESSTYFSNQPAQGQKRKK
APFFKYSKKMKAYGNQGYSSKGRGYSYNKSSSGSRGGSQSSGRGSTTSAAGKKLGFLSAP
TPQSNQRPFLKPTYSHIS
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtctgcctcaaaataatctgaaggaacagctggcgaggcacaacaacgctgct
cacagcaagctgtctctggctaaacctaaaacgggggctttctcgttcaaaaaacaatct
tcatcgggtacaactaaagtggagtacccaacaaaggtaaacagtccaaacattttggca
aacaggaacgtgaatgtgcaggggaacagtttattgactaaatcttctttaacattttca
aacaagcttgaaaggactcagaaatccaaaatcaacaatttcttctctccaagtacaaat
tccaagtccaatttcagcctagcaggtaactccacttcagcatgtcaggcacccccagca
gatactggcggtaaggtgattgctgctcctgctaaacccgacaacccgtcctcctgtggt
gggaaaggaaacagctccacaggattagatttatctgatttaccttttgacgactgggat
gattttgaagactttgaaacacctaccaaaacaaaaaacgactccctctgctcagagaaa
tcagtacgggtcaccaagacagtgtcatcctcagatgaagaatttccagagttcactgga
aaacaaagccacggtcatttaaaatcggagttaagcaagaagaacagagaacaatcttgt
atggagaaagaagaaccggaacccggtgttggtaaaacagcagtctcattagaacctagt
ttagttgatgggcttccagaggatgaagtggaagatactcctgttaaaaggaccagaagg
cgctgtcctcctccacatgtgacatctgtgttgagtgatagcgatgaggagatccgcacc
atgtctgaacctttaaaagataaaacagatgaaaaggcaaaatggattgatcctaaagtg
atcaagctaaatgacaactctgaacccacggaagatgtggattatattcctgattcacct
cctcctgatgagactttttataggccttcttcagcagagacaagaagaactcactcaggc
attgtacagagcagagacaaacttttccaatcaaacatccctgctgcaactctgcttgaa
ccttctaataacctctccagtgacaaaacaaaggaacaactcttcagcattatggagtcc
atctgtactctggttgattccatccccgaacatgaactgatagctttgacctgtggaaat
gaacttttgctaaagagggcttataggaaaaggattcttgcttgtggggttgattctttg
cgtatgccgcagccggacagcacagtgatttctgacaccagctacaaagaaactttttcc
agttgtagtgcatctagtctgacgtctcccagcagttccctctttttggacactaagaaa
cctctgaattcccaaagattgtcagtaatctctgtggactatgactctgattacttggac
agtgccagtttaaagccctggaataagacggaaagcagtatttgcgactctccatcagcc
caaagtttcacaaaaccacattttagtctctcagagaaaacaagctctgatgttaatgat
actgatcttttcttctccgccaagaaattggaagatgagcaactcaaatccaaaacccca
acacatgcaattaccgcagactttgaagcagacgactttgatgttgacgattttgatata
gatgactttaatgattctgacatccctgattactttgatgaacctccaacttcgtctatg
ttgagtgaaaacccaaacactacatgtgctgctgtgacaaaaggaggaccaaacaagtcg
ccatgggacaagaaaccagtgactcctgtttctactccaaaacctcagaagatttattca
ccagagcccaacttcaaaaacccggctcacgatcgcttccgaggctttgacttccctcat
tcgcaggagatgatgaagatttttcataaacgttttggactccatcagttcagatttaat
cagctggaagcgattaatgccactttgctgagagaagatgcatttgttttgatgccaaca
ggagggggtaaaagtttgtgctaccagctgcctgcctgtctctcatctggagtgactgtt
gttgtttctccacttaagtcgcttattgttgaccagatccagaaactaaccactctagat
attccagcaacaagtctgtctggtgataaaagtgacagtgaggcaggaaggatttatatg
cagctctcccgcaaagacccaatcattaaactgctgtatgccacacctgaaaaggtgagt
gcaagcaacaggttgatctctgctctgcagaacctgtatgagcgaggccttctagcccgc
tttgtcatcgatgaggcacattgtgtcagtcagtggggtcatgattttcgtccagactac
aagaagttgcatgaactgcgtcagaagtttcccaacataccaatgatggccctgacagct
accgccaccccccgtgtgcagaaagacatcctcaaccagctaaacatgagtaaaccacaa
gtatttaccatgagtttcaacagaacaaacctcaagtacgccgttttgcccaagaaaccc
aaaaaggttgacgaggactgcatcagctggatcaagaagcactacccacgagactctggc
attgtatactgcctgtctcgtaatgactgcgatgccctggcagagagtctgaagagagca
gggatacaggcattgtcgtatcatgccggactgagcgatggcaacagagaatatgtgcag
agcaaatggatcaatcaggacggttgccaggtcatttgtgccacaatagcctttggtatg
ggtatagacaaacctgatgtgcgctacgtgatccacgccagtctgcctaaatcaatggag
ggttactaccaggagtccggaagagccggcagagatggagagatctcccactgcattctg
ttttattcctatactgatgtccaccgcatcaaaaggatcattagcatggaccaagaaggc
aacaaacactccaagacgactcattacaacaacctccacagcatggtgcacttctgtgag
aacgtgatggattgcagaaggattcaacttctcgcctactttggagaactgaagttcaac
agaaacttctgtaaagaccatccggacgtcagctgtgataactgcgccaaacccaatgaa
tataaactgaggaaggtgactgatgatgtgaagaagattgtgaggtttgttgaggagaac
tgtgagaaagttggagcaaggtttggaaagacaccccagcaaaaccgactgacactaaac
atgctcgtggacatatttataggggctaaatctgccaaaatacagacaggaatgtttggg
atgggagctgcttactctcgccacaacgcagaccgtctcttcaagaaactggttttagat
aatgttctggtcgaagatctctacatcaccaacaatggccaagcggtgtcttacatttct
gctggacccaaagcaatgaacatactgtctggtcacatggaggtggagttctatgagaca
gagagcgcgtccagcatcaggaagcagagagctgctgtgaagagcatctccaagagagag
gaaatggttcagaattgtctgaaggagctgatagatctgtgcaagcagctgggcaaagcg
tttggccttcactattacaacatcttctccactgccaccttgaagaagatatctgagaaa
ctttcttccgatccggaggctcttttacaaattgatggagtgacggaggacaaactggag
aagtatggagctgaagtcattaaggttcttcagaaatactctgaatggcagctacctgtg
gatgagcagactgaaagtgctggaaatagctggatagacacaagacgcacagaagatgac
gatacggagtcctcaacctatttcagcaaccagcctgctcagggacaaaagaggaagaaa
gctccattcttcaagtattctaagaagatgaaagcatacggcaaccaaggctattcctct
aaaggtcgtggctatagctacaataaatcgtcctctggctccaggggtggctcccagagt
tcgggtcgggggtctacgacttctgcagcaggcaaaaaactaggattcctgtctgcccca
acgcctcaaagcaaccagcggccattcttaaagccaacctactctcacataagctaa
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integrated database retrieval system
