Xiphophorus hellerii (green swordtail): 116736636
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Entry
116736636 CDS
T07363
Symbol
apex1
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) lyase isoform X1
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
116736636 (apex1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116736636 (apex1)
Enzymes [BR:
xhe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
116736636 (apex1)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
116736636 (apex1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
116736636
NCBI-ProteinID:
XP_032445133
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All DBs
Position
17:16566013..16569021
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AA seq
336 aa
AA seq
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MPQLCVLLCVRAVCVRGVFACRTSSNMKRGKKTDDGSADGENDAGSASAKKAKKSKEPEA
PVLYEDPPDKMTSKDGRSANMKITSWNVDGLRAWVKKNGLDWVREEAPDVLCLQETKCSE
KALPAQITSMPEYPHKYWAASNEKEGYSGVAMLCKTEPLKVTYGIGKEEHDKEGRVITAE
FPNFYLVTAYVPNASRGLVRLDYRKTWDVDFRAYLSELDIQKPLVLCGDLNVAHQEIDLK
NPKGNKKNAGFTPEEREGFSQLLAAGFVDSFRELYPEQANAYTFWTYMMNARSKNVGWRL
DYFLLSSSLLPGLCDNKIRNKAMGSDHCPITLHIAV
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgccacagctgtgtgtgctgctgtgtgtgcgtgctgtgtgtgtgcgaggtgtgtttgcc
tgcagaaccagttccaacatgaagagaggcaagaagacagatgatgggtctgctgatggg
gagaatgatgcaggctctgcttctgcaaaaaaagccaagaaatccaaggaaccagaagcg
ccagtactgtacgaagacccccctgacaaaatgacgagcaaagatggccgtagcgccaac
atgaagatcacctcctggaacgtagacgggctcagggcctgggtgaaaaagaacggactg
gattgggtgcgtgaggaggcgccagatgttctgtgcctccaagagacaaagtgttcagag
aaagcccttcctgcccagatcacgtccatgcccgagtacccccacaaatactgggctgcg
tccaatgagaaggagggctacagtggtgtagccatgctgtgcaagactgaacctctcaaa
gtcacttatggaattggcaaagaggagcacgataaggaggggcgcgtcatcacagccgag
ttcccaaacttctaccttgtgacggcctacgtcccgaacgcgagcagaggcctcgtccgc
ctagattaccgcaaaacctgggacgtggacttccgagcttacctgagcgagctcgacatc
cagaagcccctggtgctgtgcggcgatctcaacgtcgcgcaccaggagatcgacttgaag
aacccaaagggcaacaagaagaacgcaggcttcaccccggaggagcgcgaagggttcagc
cagctgctggcggccggcttcgtggacagcttccgtgagctctacccggagcaggccaac
gcctacaccttctggacctacatgatgaacgcccgctctaagaacgtgggctggcggctc
gactacttcctgctctcgtcttccctgctgccaggcctgtgcgataataagatccgtaac
aaggcaatggggagcgaccactgccccatcactctccacatagctgtgtga
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