Xiphophorus hellerii (green swordtail): 116736687
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Entry
116736687 CDS
T07363
Symbol
sox5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xhe03000
]
116736687 (sox5)
Transcription factors [BR:
xhe03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
116736687 (sox5)
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Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
OVT1
Motif
Other DBs
NCBI-GeneID:
116736687
NCBI-ProteinID:
XP_032445216
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Position
17:complement(15280462..15383428)
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AA seq
786 aa
AA seq
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MLLLSRETDPYSSMLTEPELPQECNRMSSKRPASPYGGTDGEVTMATSRQRVEDEESEGP
GGVIHLPLASYCGKVSPHSPPSRHLDSPPSTEHDGIKGSSLSPYPQHNATSPGKEEGGGG
GRPCSDGGSATGTLGTPERRKGSLADVVDTLKQRKMEELIKNEPEEAPSIERLLSKDWKD
KLLAMGSGHIGEIKGTPDSLAEKERQLMGMIGQLSSLREQLLAAHEEQKKLAASQMEKQR
QQMELAKQQQDQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAA
AQQGFLMPPGFNYKPGCSDPYPLQLIPTTMAAATPGLGPLQLQQLYAAQLAAMQVSPGTK
QHGGSLAPQANLGAHSPPTNSHPQGDKNRSSPPSNKNKDSEGAQPLNLSAKPKASESKSP
NSPPTSPQVPAAAAATTKLGPAGSVKHSAVPSSIGAPSTRVSSIADLLSSLSSTAYLNDH
EAVSKAFAEARQMKEQLKGEQQALDAKMASVSNLSLNNGRSDKDKAALESLSQQLKQQAD
DKFSHAMLDFTMSGDSDGSPSVSDSRIFRETRGRNNNEPHIKRPMNAFMVWAKDERRKIL
QAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLV
DGKKLRIGEYKAIMRSRRQEMRQYFSVGQQGQLPLSSAGMVYPGALSMAGMPSPQMPSEH
SSMSSSPEPNANHHQNPHMPGLKGDETRIKEEELRLDDSNGDVYDDFDYEDEEADYASDN
DNHIPH
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgttgttgttgtcgagagagacggacccttactccagcatgctcactgagcctgagcta
cctcaggagtgtaacaggatgtcttccaagcgaccagcctctccatatggggggacagat
ggagaggtaaccatggcaaccagcagacagcgagtggaggacgaggagagcgagggaccg
ggcggtgtcatccacctccctctggcctcctactgcggaaaggtgtcccctcactctccc
cccagccgccacttggatagcccccccagcacggagcacgatggcatcaaggggagctct
ctgagtccttacccacagcacaacgctacctcaccaggcaaagaggagggcggaggcggg
gggagaccctgcagcgacggcggctcggcaaccggcaccctggggacccccgagagacgc
aagggcagcctggcggacgtcgtggacacgctgaagcaacgcaagatggaggaactgatc
aaaaacgagccagaagaggcccccagcattgagaggctgttgtcaaaggactggaaggat
aaacttttggccatgggctcagggcacatcggagaaattaaaggtaccccagacagcctg
gcggagaaagagcgccaactcatgggcatgattggccagttgagcagcctgagggagcag
cttctggcggcgcacgaggagcagaagaagctggccgcctcacaaatggagaagcagagg
cagcagatggagctggccaagcagcagcaggaccagattgcccggcaacagcagcagctt
ctgcagcagcaacacaaaatcaacctcctgcagcaacaaatccagcaggtccagggccag
ctccctccactgatgattcccgtgtttcctcctgaccagcggaccctggcggccgccgca
gcccagcagggcttcctgatgccccctggcttcaactacaagcctggctgcagtgacccc
taccctctccagctcatccccacaacaatggccgccgccacgcccggcctggggcccctg
cagctacaacagttgtacgcagctcagctggcggccatgcaggtctccccggggacgaag
cagcacggtggcagcctcgcgccccaagccaacctgggcgctcactccccacccaccaac
tcacatccacagggcgacaagaaccgcagctccccaccttcaaacaaaaacaaggacagt
gagggtgcacagccactgaacctgtcggccaagcctaaggcatccgagagcaagtcaccc
aactcccccccaacttccccacaggttcccgctgccgctgccgccaccaccaagctgggt
cccgccggctccgtgaagcacagcgccgtgccctccagcattggagcgccgtccaccaga
gtcagctcaatagcagacttgttgtcttcgttgtcgtcgacagcctacctgaacgaccac
gaggcggtgagcaaggccttcgccgaggcccggcagatgaaggagcagctgaagggggag
cagcaggccctggacgccaagatggcctccgtcagcaacctcagcctcaacaacggccgc
tccgacaaggacaaagctgccttggagagtttgagtcagcagctgaagcagcaggccgac
gacaagttcagccacgccatgctggacttcaccatgagtggagactccgacggatccccc
agcgtgtccgactccagaatatttcgggaaacgcgtggcaggaacaacaacgagccgcac
attaagcggccgatgaacgccttcatggtttgggccaaggacgagaggcggaagatcctc
caggccttcccagacatgcacaactccaacatcagcaagatcctcggttcgaggtggaaa
gccatgaccaacctggagaagcagccttactacgaggagcaggctcgcctcagcaagcag
cacctggagaaatacccggactacaagtacaagccgcggcccaaacgcacctgcctggtg
gacggcaagaagctgcgcatcggcgagtacaaggccatcatgaggtcccgcaggcaggag
atgagacaatacttcagcgtagggcagcagggccagctgcccttatcctctgcaggcatg
gtctacccaggtgccctttcaatggcagggatgccctccccccagatgccctcagagcac
tcaagtatgtccagcagcccagagcccaacgccaaccaccaccagaacccccacatgccc
ggactgaagggggacgagacacggatcaaggaggaggagctgcggctagacgacagcaac
ggtgacgtgtacgatgattttgactacgaggacgaagaggccgactacgccagcgacaac
gacaaccatatcccccattaa
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