Xiphophorus hellerii (green swordtail): 116736852
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Entry
116736852 CDS
T07363
Symbol
dcp1b
Name
(RefSeq) mRNA-decapping enzyme 1B isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116736852 (dcp1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116736852 (dcp1b)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116736852 (dcp1b)
mRNA degradation factors
5'-3' decay
Decapping complex
116736852 (dcp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
mRNA_decap_C
WH1
Zip
Motif
Other DBs
NCBI-GeneID:
116736852
NCBI-ProteinID:
XP_032445576
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Position
17:complement(4355385..4370426)
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AA seq
630 aa
AA seq
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MSSAASNSCLAAKGLDISLSALQRQDPYINNIVDVASQVALYTYNNRANEWEKTEVEGTL
FIYTRLASPRHGFTIMNRLNMENLTEPITKDLDFQLQDPFLLYRNARLFIHGIWFYDKQD
CQRIAQRMRILTQQEQILAQSQGGSLSPRAAAGGGGVLVGGNNEAKAVDIIQMLTKARTE
YDKSTSEPKEIGGSSVLCGNPNLIKPIPVKPNTQVNEGADTTVVTLTTLLGSQHQHHHPL
KSDPVPPLAASTAAGKVARPPVARTLTYEDSLNTGRNVATSGGGDPAVGPADREESGNAL
RQLPNQLQHCPAIAKLMQGQRGAAAAGGVLQTLSESPENRLCDNGVPLEHHHHHHPHHHQ
HQHPHLHHHHQEQQHDPIKRLLQNHPPPLLATSFTAAAPLVLQQNPYPASQPGQLDSVSR
SHLEAQQGQQLLLGLTKLQAEIQKRGPTDSAAMGTGLSSQMQGVVSPHELLQKLQLVQQE
QSLTSHEHPRLHPHPGLAPRFLGPSASQSQGSSLGTGPTQTSVAPDQKAELQFQIISPQR
IPATVAPILLLSPSVFTQTKSSSRLPVAAPESSSVPSTLCKPSLQEEVRALSRSQLQAAL
LHLIQTDSSFLDSIYKAYVSRFANSSGSKY
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgagttctgcagctagcaatagctgccttgctgctaaagggctggacataagtctgtct
gccctgcagagacaagacccttacataaacaacattgtggacgtggccagccaagtcgcc
ctgtatacttataataaccgagcaaatgagtgggagaagacagaagtggagggcactttg
tttatttacacaagattggcatctcctaggcatggcttcacaataatgaaccgtcttaat
atggagaatctgacagagcccatcacaaaagacttggacttccagctgcaggaccctttc
cttctttaccgtaatgcacgattgtttattcatgggatctggttctacgataagcaggac
tgtcagcgaattgcacaaaggatgaggattctgacccagcaggagcagatcctcgctcag
tctcagggtggttccttatcccctagagcagcagcaggaggaggaggtgtcttagtcgga
ggaaataacgaggcgaaagcggtcgacatcattcagatgttgactaaggcacgaacagag
tatgataagtctacctcagagccaaaggagattgggggcagcagtgtactgtgtggaaat
cctaatctgatcaaaccaataccagttaaaccaaacactcaggtgaatgaaggagcagac
accacggttgtgaccttaaccaccctgttaggctctcagcatcagcaccaccaccctctt
aaatctgacccagttcctcctctggctgcttccacggcagcaggaaaggtcgcccgccca
cctgtcgcccgcacactgacctatgaggattcactaaacactggcagaaacgtcgccacc
tcgggaggtggagacccagcagtcgggccggcggacagggaagagagcgggaacgctctc
cgccaactgccgaaccaacttcagcactgtccggccattgcaaagctcatgcagggacag
aggggggcggcagcagctgggggtgtgcttcagacactgtccgagtccccagagaaccgc
ctgtgtgacaacggggtgccgctagaacaccaccaccaccatcatccccaccatcaccaa
catcagcacccccacctccatcaccaccaccaggagcagcagcacgacccaataaagcgt
ctcctgcaaaaccatccaccccctctactcgccacttctttcactgccgcggctcctctg
gtgctgcagcagaacccttatcccgcctctcagcctggccaactggattctgtgtcacgt
tcccacctcgaagcacaacaaggtcagcagctcctcctcggcctgacgaagttacaggca
gagatacagaagagagggccgacggattctgctgccatgggaacaggtttgtcatcccag
atgcagggtgtggtttctcctcatgagctcctgcaaaaactccagctggtccagcaggaa
cagagcttgacttcccacgagcatcctcgactccatccgcatccaggactggcacctcga
ttcctggggcccagtgcgagtcaaagccaaggctcatctttaggcacaggcccaacccag
acttcagttgccccagatcaaaaagctgagctgcagtttcagatcatctccccacagcgg
atacctgccacagtggcccccatcctgctcctctctcccagtgtgttcactcagacgaag
tccagcagcaggctaccagtggctgctccagaaagcagctctgtaccctcaaccttatgc
aaaccttcactgcaggaggaggtcagagctctttctagaagccagcttcaagcagcactg
ctgcacctgattcagactgacagctcattcctggactccatctataaagcatacgtcagc
cgcttcgctaacagctccggcagcaagtactga
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