Xiphophorus hellerii (green swordtail): 116736873
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Entry
116736873 CDS
T07363
Symbol
lum
Name
(RefSeq) lumican
KO
K08122
lumican
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xhe00535
]
116736873 (lum)
Proteoglycans [BR:
xhe00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class II
116736873 (lum)
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GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_6
LRR_9
LRR_14
LRRNT
LRR_LRWD1
DUF7409
Motif
Other DBs
NCBI-GeneID:
116736873
NCBI-ProteinID:
XP_032445607
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Position
17:6795851..6800661
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AA seq
342 aa
AA seq
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MFPFHVTLLVLLANIARCQYYDYDYQPFSMLGPSGPNCNKECDCPINFPSAMYCDSRKLK
FVPVVPTGIKYLYLQNNLIEEIKAGVFDNVTDTLRWLVLDNNQITNAKIEKGTIDKLTAL
EKLFFSFNEITEAVIPPSKSLEELKMTNNKLSKFPSGLLNDKENLTSVSLQHNELTSEGI
ADAFKGPKKLLSLDLSHNKLKKLPAGVPSSMEILYADYNEIDKIGAGYLKKLPTLRYLRV
SHNKLQDAGIPAGVFNVTSLLELDLSFNKLQSIPEINEQLEQLYLQANEISKFDLASFCK
YTGPLNYSRLKHLRLDANNVTHTDMPPESANCLRQASDIMFE
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgtttcctttccatgtcaccctcttggtattactggccaacatcgcccggtgccagtat
tacgactacgactaccagcctttttcgatgcttgggccatcagggccaaactgcaacaaa
gaatgtgattgcccaatcaatttcccaagtgcaatgtattgcgatagccgcaagctaaag
tttgtccctgtggttcccactgggatcaagtacctgtacctccagaacaacttgattgaa
gagatcaaggcaggagtttttgataatgtcactgacaccctgcgctggctggtgcttgac
aacaatcagatcaccaacgccaagatagagaaaggcacaattgataaactgacggccctg
gagaagctattcttcagcttcaacgagatcacagaggcagtcattcctccctcaaagtcc
ctcgaagagctgaagatgacgaacaacaagttgtccaagtttccgtctggactcttgaat
gacaaggagaatttgacctccgtcagccttcagcacaacgagctaacctctgaaggcatc
gcagacgcattcaaaggcccgaagaagctgctgtcgttggacttgagccacaacaagttg
aagaagctgccagccggagtcccgagttcgatggaaattctctacgctgattataatgag
attgataaaatcggagcagggtatctgaagaagctgcccaccctgcggtacctgagggtc
tcccacaataagctgcaggatgctgggattcctgctggggtgttcaatgtgacttcgctc
ttggagctggatctgtcgttcaacaaacttcagtcgatccctgagatcaacgagcagctg
gagcagctctaccttcaggccaatgagatcagcaagttcgatctggcgagtttctgcaag
tacacaggaccgctgaactattcacgtctcaaacatctgcgtctggacgccaacaacgtc
acgcacaccgacatgccccccgagtccgcaaactgcctgcgtcaagcttctgacatcatg
tttgaatga
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