Xiphophorus hellerii (green swordtail): 116736960
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Entry
116736960 CDS
T07363
Name
(RefSeq) transcription factor SOX-6-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xhe03000
]
116736960
Transcription factors [BR:
xhe03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
116736960
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Activator_LAG-3
Motif
Other DBs
NCBI-GeneID:
116736960
NCBI-ProteinID:
XP_032445754
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Position
2:24700290..24854609
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AA seq
780 aa
AA seq
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MMSSMRATPPFHPPPSQEADATDQDNNAAWAGDERDGLTETVPGTTPPRDRPCPDEPPLA
GKKTPADIIEWETVAPAVMDNEGSKGCSGYPYRTNSTSPTKPEECSRDRGESVIGLAFGT
PERRKGSLADVVDTLKQKKLVELTKSEQDEPSCMVRLLSKDWKDHVEGLNAGELLGEVKG
TPESLEEKERQLSTMIGQLISLREQLLAAHDEQKKMAASQLEKQRQQMELARQQQEQIAR
QQQQLLQQQHKINILQQQIQVQGHMPPLMIPLFPHDQRSLAAAAVAQQGFLFPPGMSYKP
GENYPMQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQISPGAKMAPLPQAPNSSGPLSP
SNLKSEKRASSPVTQIKEEGSTQPLNLSARPKMAEPYRSPTSPTQSLLPGNKTSPGGLGK
GRIPSPIPSMGRNASLDILSSLNSTALFGDQDAVMKAIQEARSMREQIQREQLLHQQQQP
GHQSLEAKLSALSSMNLNNSNKERLHYETLSQHLGKLGEDTGKMVHRVIDLTRPEDLDGN
NITEARVFREARGRNSSEPHIKRPMNAFMVWAKDERRKILQTFPDMHNSNISKILGSRWK
AMTNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQLMRSRRQE
MRQFFVGPQPQISLGNSSGGVGVYPGAITMATTATPSPHLTSDCSSTSASPEPNIPVIQS
TYGAKSEPGGGSNGTGVGAMDLPGDPANGDDDMDMYEDFEDEPKSDYSSEHETREVVSAN
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttccatgcgagcaacgcctcctttccacccaccgccatcccaggaggcggac
gccacggatcaggataacaacgcggcctgggccggagacgagcgggacggcctgacggag
acggtccctggcacgaccccgccacgcgaccggccctgcccggacgagcccccgctcgcc
gggaagaaaacgccggccgacatcatcgagtgggagacggtcgccccggctgtgatggac
aatgaaggcagcaaaggctgctctggctacccttaccggactaactctacctctcctacc
aagccggaggagtgttccagggatcgaggggagtcggtgatcggcctcgccttcgggact
cccgagcggcgtaaaggaagtctggcagacgtggttgacacactgaaacagaagaagctc
gtggagctgaccaagtcggaacaagacgaaccttcctgcatggtgaggctactttccaag
gactggaaggatcacgtcgaaggcctcaacgccggcgagctgctgggggaggtcaaaggt
acgcccgagtcgctcgaggaaaaggagcgccagctgtccaccatgatcggtcagctgatt
agtctgcgggagcagctgctggccgcccacgacgagcaaaagaagatggccgcctcgcag
ctagagaagcagagacagcagatggagttggccaggcagcagcaggagcagattgccaga
caacagcagcagcttttgcagcagcagcacaagatcaacattctccagcagcagattcag
gtccagggtcacatgcctcctctgatgatccccctgttcccacacgaccagcgctctctg
gctgccgccgccgtcgcacagcaaggcttcctcttcccgcccggcatgtcctacaagcca
ggtgagaattacccaatgcagttcattccgtcgacaatggcagccgcggcggcctctgga
ctcagcccgctacagctgcagcagctgtacgccgcacagctggcaagcatgcagatctct
ccgggagccaagatggcgcccctcccgcaggctcccaactcctccggtccgctttcaccc
tccaacctcaagagcgagaagcgagcgtccagccccgtgactcagattaaggaagaagga
tccacacagccattgaacctctccgccagaccgaagatggccgagccgtatcgctctccg
acgtcgcccacgcagagcctgctgcccggaaacaagaccagcccaggtggcctgggcaag
ggtcgcatcccgagccccatccccagcatgggccgaaacgcctcccttgacatcttgtcc
agccttaactcgacagcgttgtttggggaccaagacgcggttatgaaagccatccaggag
gcgcggagcatgagggagcagatccagagggagcagctcctccatcagcagcagcagccg
ggccaccagagtctggaggccaagctgtccgcactcagcagcatgaacctcaacaacagc
aacaaggagcggcttcactacgagactctcagccagcatctggggaagcttggggaggac
acagggaagatggtccatcgagtcatcgacctgacgagaccagaggatctggatgggaat
aatatcacagaggcacgggtgttcagagaggcacgaggcaggaacagcagcgagccccac
atcaagaggcccatgaacgccttcatggtttgggctaaagacgaaaggaggaagatcctg
cagaccttccccgacatgcacaactccaacattagcaagatcctgggttctcgctggaaa
gccatgaccaatcaggagaagcagccgtactatgaggagcaggcccgcctcagcaagatc
cacctggagaaatatcccaactacaagtacaagccgcggcccaagaggacctgcatcatc
gacggcaagaagctgcgcatcggggagtacaagcagctgatgcgctcgcggcgtcaggag
atgaggcagttctttgtggggcctcaaccccagatttctctgggcaacagctcaggaggc
gttggagtttaccctggcgctatcaccatggcgacaacggcgacgccctccccgcacctg
acctcggactgctcgagcacgtcagccagccccgagccgaacatccccgtcatccagagc
acgtacggggcgaagtccgagcccggcggaggcagcaacggtacgggcgtcggcgccatg
gatctccccggtgaccccgcaaacggagacgacgacatggacatgtacgaggactttgag
gacgagcccaaatcggactatagcagcgagcacgagacgcgggaagtggtcagcgccaac
tga
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