Xiphophorus hellerii (green swordtail): 116737011
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Entry
116737011 CDS
T07363
Symbol
parpbp
Name
(RefSeq) PCNA-interacting partner
KO
K27412
PCNA-interacting partner
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116737011 (parpbp)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
116737011 (parpbp)
TLS (translesion DNA synthesis) factors
Other TLS factors
116737011 (parpbp)
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Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
GreA_GreB_N
Motif
Other DBs
NCBI-GeneID:
116737011
NCBI-ProteinID:
XP_032445845
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All DBs
Position
17:8320441..8339377
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AA seq
589 aa
AA seq
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MSAFADHLKLMVKTFRRESHRVLPSERTTVHGADSMLMVLQLAMAEVNKQHQGEFKVGLS
DVLMAWKHLLLDKLHLLPPGAPRLENSELFLEAYQSFLKRSNTVDLTDVLAMNKELRAAG
SDPEEPVSAIQLFEFLSGNMETPDLPDSSAPLTPSSQSRRCHSQIKMAVRRVFCSYLSLL
VNSRNDMALALTLNVPCRSLERQAFTDIKHAARDRQTSLFLAVTSFVRAIQLGGKGYAPA
ESDPLRKHIKGLSDYVQFMDNLEEILGEIPDPSECGARLLAAIRAALVKGRSTEDPTYAA
ADETTKELKERIVQLHQTQKQAANVDGTGISPARPKAYAVNHATAYGGRETVKVLMALLD
EEAVAPLCGNKADLLTEDQPVLSGAEGTCVLTLFRSPEVSTGCSPESLRNRVQSRLNLLK
PKATQRVIRSQFACTYNDEPPLNRVLDFPSTSQMPTCVHPAPKPTTSLTVEDGSNPDTED
TAAKPSSESRRKERFEVQRGVAPEQRSGNAQNGGGCPSNKRKTGIQMQSKGNKRKQLDSE
QHTESENEPPEKKQHTRVSVKVPGKNVCKASNKKKLITGQGKLTSFFRV
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcattcgcagaccatctgaagctgatggtaaaaaccttcagaagggagtcccac
agggttttaccgtcagagaggaccactgtccacggagccgacagcatgctgatggtgcta
cagctggccatggctgaggtcaacaagcagcatcagggagagttcaaggtgggtctgagc
gacgtcctgatggcgtggaaacaccttctgctggacaaacttcacctgctgccccccggc
gcccctcgcctggagaactctgagctcttcctggaggcgtaccaatctttcctgaaacgc
tccaacactgtggatcttacggatgttctggccatgaacaaggagctgagagcggcgggt
tcggatccggaggaacctgtgagcgcgatccagctgtttgagttcctgtcaggtaacatg
gaaaccccagatctcccagattcatcagctcctttaacgccgtctagtcagagcaggcgc
tgccactcccagataaaaatggcagtgaggcgagttttctgctcatatctgagtttgctg
gtgaactctagaaacgacatggccttggccctcaccctcaacgttccctgtcgctctctg
gaacggcaggcattcactgacatcaagcatgccgcccgagaccgccaaacatctctcttc
ttggctgtgacatcttttgtaagagcaatccagcttggagggaaggggtacgcaccagca
gagtctgatcccctcaggaagcatatcaaaggcctgtccgactatgtccagttcatggac
aatctggaggaaatactgggggaaattcctgacccaagtgaatgtggagccaggctgctg
gccgccatcagagcagctctggtgaaaggacgcagtactgaagatccaacgtacgctgct
gcagacgaaacaacaaaagagctaaaagagaggattgtccagcttcaccagacccagaaa
caagctgctaatgtggatgggacgggtataagtcctgctaggccaaaagcttacgcagtc
aaccacgccactgcatatggagggcgggaaacggtaaaggtgctaatggcgctgcttgac
gaagaagctgtggctccgctgtgtggtaacaaggcagacctgctgactgaagaccagccg
gtcctcagcggagccgagggaacatgtgtcctcacgctgttcagatcccctgaagtgtcc
actggatgttctccagaatccctgaggaacagagtccagagccgactaaacctgctcaag
cccaaggctacacaaagggtgatccggtcccagtttgcctgcacatataacgatgaaccg
ccgctcaaccgagtgctggacttcccaagcaccagccagatgccaacctgtgttcaccca
gcgccaaagccaacaaccagcctaactgtggaagacgggtccaacccagatacagaggat
acagcagccaagccttccagtgaatcccggagaaaagagcgctttgaggtacagcggggg
gttgctcccgagcagaggagtggaaatgctcaaaacggaggtggatgtccaagtaataaa
aggaaaactggcatacagatgcagagcaagggtaataagaggaagcagctggattctgag
cagcacaccgaatcagagaatgaacctccggagaagaaacagcacacccgtgtgtcagtc
aaagtgcccggcaaaaacgtctgcaaggcttcaaataaaaagaaactcataactggacag
ggaaagcttaccagcttctttagagtttag
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