Xiphophorus hellerii (green swordtail): 116737372
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Entry
116737372 CDS
T07363
Symbol
ncam1
Name
(RefSeq) neural cell adhesion molecule 1 isoform X1
KO
K06491
neural cell adhesion molecule
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
xhe04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
116737372 (ncam1)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
116737372 (ncam1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116737372 (ncam1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xhe04515
]
116737372 (ncam1)
04090 CD molecules [BR:
xhe04090
]
116737372 (ncam1)
00536 Glycosaminoglycan binding proteins [BR:
xhe00536
]
116737372 (ncam1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
xhe00537
]
116737372 (ncam1)
04091 Lectins [BR:
xhe04091
]
116737372 (ncam1)
Membrane trafficking [BR:
xhe04131
]
Exocytosis
Tethering complex
Exocyst complex assembly proteins
116737372 (ncam1)
Cell adhesion molecules [BR:
xhe04515
]
Immunoglobulin superfamily
NCAM1/2
116737372 (ncam1)
CD molecules [BR:
xhe04090
]
Proteins
116737372 (ncam1)
Glycosaminoglycan binding proteins [BR:
xhe00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
116737372 (ncam1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
xhe00537
]
Others
116737372 (ncam1)
Lectins [BR:
xhe04091
]
I-type lectins (Siglecs)
116737372 (ncam1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
Ig_DSCAM-DSCAML_C
V-set_CD47
C1-set
Pur_ac_phosph_N
C2-set_2
C2-set_3
Adeno_E3_CR1
DUF4959
Motif
Other DBs
NCBI-GeneID:
116737372
NCBI-ProteinID:
XP_032446350
LinkDB
All DBs
Position
18:27991519..28102114
Genome browser
AA seq
1222 aa
AA seq
DB search
MVQTRNVFLALLLVGSTVSLEVQITPTHGEISLGESKFFMCDVVGVAKHVDWYGPSGERI
APNRPDLTVTRNDESSSTLTFYEAKTDSAGTYKCVATNGDQQAEATVKVKIFQRITFTNA
PSRQEFTEGDNANIVCDVTSSPPPTVFWKYKGAKIQMEKDVRFKVLSNNHLQIRGIKKTD
EGMYMCEARLMARGEIDLRPISVVVNVLPTIRIWQSEVNATAEIAQPATLTCAVDGYPEP
MVTWIRNGVELRDEEKYGFNEDGSEMTIMDVTKLDEGEYTCVAKNKAGESEKELSLRVFV
KPKITYIVNRTASETEEQVTVTCEASGDPTPTISWSYGEQVFTEGDQAHLNRIYQASWTR
PEQHKSPDGNVVVRSDARVSSLTLKYVKYTDAGQYLCTARSAIGEDEQTAYLEVRYTPKI
HGTVAVYTWEGNPVNISCEVKAFPTDVSIVWLRDGLQLPNSNTTNIKIFRTPLSSYLQIT
PESENDFGSYNCTASNEMGTESKEFLLIQAEVPSSLVIDEVRPFSTTALIQFGEPESTGG
VPILKYRAEWRMQGRSSWTQKVYEVQDDFVNEVTITGLKPESRYEVKLSAINGKGEGESS
PTELFKTEPVHDLFHFFTDGTEGNPNPPKLEGSVEPKGNSLKVSWLKQDDGGSPILHYLI
RYKPIQTSQWKPEIRMPSGSEYVVLRGLDWDTEYDVYVVAENLKGKSPPATMSFRTSAEP
EAFPDLGDEGPIFMNIILWAGILVVVFLLLLLAVDVTCYFVNKCGLIMCLCGKSGTGTKG
HVLEEGKAAFVKDESKEPIVEVRTEDECTANHNAAGPMEPNETTPLTKPELVASLALDTP
SSIATNSDTATATIDPAQESPSSETTTLTCSLSTLANEPSPTPLTAPAPTPESNTAPPTP
VVSSTAVEAKMAPLLEERGSKTSEEPEKTSNPPATPEQCRPQKSGTPIPPKRRHSPKLAA
LNAKNSPPVSPLAVSSPPLIPDGKKPAPSPPVNKPTPRANAVALSKETPAQTAAATANTA
PPKPAPESKPSLPDSTAYTFTDFDTDNPTDNNIPTTKPAPINTPSDIHNAVEDPHFKNPI
TLLADVPSPLPITAIASAVPNDLLTPGSDLYDLTAPDAVHKNADLELELRNGAGRPSRPL
SDLISLESPSAAPSLPSGDQADFPPSGPVLEASETLKTAPPVYDEKIFADEKSKLEEGDL
PNPLITSAHNSVIQTNTTESKV
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atggtccagaccaggaatgtttttttagccttgcttcttgtgggcagcacagtttcattg
gaggtccagatcacacctacccatggtgagattagccttggagaatccaaattcttcatg
tgtgatgttgtaggcgttgccaaacacgtggactggtatggcccgagcggggagcggata
gccccaaatagaccagacttgactgtaacccgcaacgatgagtcatcttccaccctcaca
ttttatgaagccaagaccgatagcgccgggacgtacaagtgcgtcgccaccaacggggac
cagcaagcggaggcaaccgttaaagtgaaaatcttccagagaataaccttcacaaatgca
ccgtctcgccaagagtttactgaaggagacaacgcaaacatcgtttgtgacgtcaccagc
tcacccccgcccacagtcttttggaaatacaaaggagccaaaatacagatggagaaagat
gttcgtttcaaggtgctaagcaacaatcacctccaaatccgcggcataaagaagaccgat
gagggcatgtacatgtgtgaggctcgcctcatggcccgcggcgagattgatctgcgtccc
atcagcgttgtggtgaatgtgctcccaaccattagaatatggcagtctgaagtcaacgcc
acagcagagattgcacaacctgccactctgacttgtgctgttgatggctaccctgaaccc
atggtgacctggataaggaacggagtagaactcagagacgaggagaagtacggcttcaat
gaagatggctccgaaatgactataatggatgtaaccaagctggacgaaggagagtacacg
tgcgtcgccaagaacaaggccggggagagcgagaaggaactcagtctgagagtgtttgtt
aaaccgaagatcacatacatagtgaaccggaccgcttcagagacggaagagcaggtaact
gtgacttgtgaagcatctggagatccgactccaaccatcagctggagctacggtgagcaa
gtcttcaccgaaggagaccaggcacatctaaacaggatctatcaggcatcatggactcgg
cctgagcagcacaagagcccagatggaaatgtagtagtaaggagcgatgctcgtgtgtcc
tccctcactctcaagtatgtcaagtatacagatgccggtcagtatctctgcacagctcgc
agtgccatcggagaggatgaacagaccgcttatctggaagtccgctatacacctaagatc
cacggaacagttgcggtttacacctgggagggaaacccggtcaacatcagctgcgaggtc
aaggcctttccaacagatgtgtcaattgtttggctcagagatggactgcagcttccaaac
tcaaacaccaccaacatcaaaatcttcagaactcctttatccagctacctacagattaca
ccagagtctgaaaatgattttggaagctataactgcaccgcctcaaatgagatgggcacc
gagtccaaggagttcctgctcattcaggccgaggttccgtcatcgttggtgatagacgaa
gtgaggcctttctccaccaccgctctgatccagtttggagagcctgaatctactggaggc
gttcccattctcaagtacagagctgagtggaggatgcagggcaggagcagctggacgcag
aaagtctacgaggtccaagacgacttcgtcaacgaggtgacgataacgggcctgaaaccg
gagagccgctacgaggtgaagctgtcggccattaatggcaagggtgaaggagagagcagc
cccacggagctgttcaagaccgagcctgtccacgacctttttcattttttcacagacgga
acagaaggaaatcctaatcctcctaagcttgaagggtcagtggagcctaaaggcaactcc
ctcaaagtcagctggcttaagcaggatgatggcggatctcccatcctgcattatcttata
cgctataaacccatccagacgtcacagtggaagcctgagatccggatgcccagtggcagc
gagtacgtcgtgctgcgtggattggactgggacaccgagtacgacgtgtatgtggtggcc
gagaacctgaaggggaagtctccgcccgccaccatgtccttcagaacatctgcagagcca
gaggccttcccagatctgggtgatgagggcccgatcttcatgaacatcatactctgggca
ggaatccttgttgtagtatttctactcctgctgctagcggtggatgtcacttgttacttt
gtcaacaaatgtggccttatcatgtgcctgtgtggaaaatcaggcacggggacgaaaggg
cacgtgttggaagagggcaaagctgctttcgtgaaagacgagtccaaagagcccatagtg
gaagtcagaacagaggatgagtgcacagccaatcacaacgcagccggaccgatggagccc
aacgaaactacacctctcacaaagccagagctggtggcttctctggcactggacacccct
tcctccatagccaccaactcagacacagccaccgcgaccattgatcctgctcaggaaagc
ccctctagcgagaccaccacactcacttgcagcctgtccaccctggccaacgagccctcg
cccaccccgctcactgctccagcgccgacccccgagtccaacacggccccgccgaccccc
gtggtctcctcgactgccgtcgaagccaaaatggcaccgttgctcgaggagagggggagt
aagacctcagaagagccggagaagactagcaatcctcctgccacccccgaacagtgtagg
cctcaaaagtctggaacgccaataccgccaaagcgcagacactctcccaaactcgctgct
ctgaatgctaaaaacagtccaccggtttcccctctcgccgtgtcttctcctcctctcatt
ccagatggcaagaaacctgcgccgagcccaccggtcaacaagcccactccacgggccaac
gccgtggccttaagcaaagagacgccggcacaaactgctgccgctacagcgaacactgcc
cccccaaaaccagccccagagtctaaacctagtcttccagattctaccgcatacaccttt
actgactttgacacagataatccaaccgataacaacatccccacaacaaaacccgctccg
attaacactccttcagatatccacaatgccgtcgaagatccacacttcaaaaatcccatc
actctattggcagacgtcccctctcctttacccatcaccgcgatcgcttcggcagtcccg
aacgacctcctcacgccggggtcagacctgtacgacttaacggctccggacgcagtgcac
aaaaatgctgatttagagttagagctgagaaacggcgcaggaagaccctcccggcccctc
tcagacctgattagcttagagagcccgtccgccgccccctctctgcccagcggagaccaa
gcagacttccctccctcaggcccagttctggaggcttcagagactctcaagaccgcgcct
cctgtctacgatgagaagatatttgctgatgagaaaagcaaactggaggagggagaccta
ccaaaccccctgatcacttcggcacacaacagtgtcatacagacaaacacgacagagagc
aaagtatga
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