Xiphophorus hellerii (green swordtail): 116737485
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Entry
116737485 CDS
T07363
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116737485 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116737485 (ddx6)
03036 Chromosome and associated proteins [BR:
xhe03036
]
116737485 (ddx6)
Enzymes [BR:
xhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116737485 (ddx6)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
116737485 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
116737485 (ddx6)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Gene silencing
piRNA pathway
116737485 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
SNF2-rel_dom
NA-iREase2
AAA
Motif
Other DBs
NCBI-GeneID:
116737485
NCBI-ProteinID:
XP_032446542
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All DBs
Position
18:6456711..6471415
Genome browser
AA seq
482 aa
AA seq
DB search
MSTTRTENPVILGLSNQNGQLRSSVKPGGAPGGGGGGPQPPQLNQMIKGAINGNSQSAPP
TNAVIKPGDDWKKNLKLPPKDMRIKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCLQALVIVPTRELALQVS
QISIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVNQVQ
MIVLDEADKLLSQDFVVMMEEMLGFLPKKRQILLYSATFPLSVQKFMNAHLQKPYEINLM
EELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKAIEEQLGTEIKPIPGIIDKSLYVAEYHSESGEEV
KQ
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccaccaggacagagaacccagtgattttgggcttgtccaaccagaacggacag
ctgaggagctcggtgaaacctggaggggcaccaggtggaggtggaggaggtcctcaacct
ccgcagttaaaccagatgataaaaggcgcaatcaacggcaattcccagtcagcccctcca
acaaacgctgttatcaagcctggagatgactggaagaagaatttgaaattgcccccaaag
gacatgaggatcaaaacttcggatgtgactgcaactaaaggcaatgagtttgaagattat
tgcctaaagagggagctacttatgggaatctttgagatgggctgggaaaagccatctcca
attcaggaggaaagcattcccatcgcactgtcaggaagggatattttggcccgagccaag
aacggcacaggaaagagcggagcctacctcattcccctgctggaacgcatcgacctgaag
aaagactgtttacaggctttggtaatcgtgcccaccagagaactggcactgcaggtcagc
caaataagcatccaggtcagtaaacacatgggcggcgtgaaggtcatggcgaccacaggg
gggacgaacctccgcgacgacatcatgaggctcgacgaaacggtacatgtggttattgct
acaccagggaggattttagacctaatcaaaaaaggagtggccaaagtcaatcaggtccag
atgattgttctggatgaagctgacaagctcctgtctcaggactttgtggtcatgatggag
gagatgctgggcttcctgcccaaaaagaggcagattttactttactccgccactttcccg
ctcagtgtgcagaagtttatgaacgcacatttgcaaaaaccttatgagatcaacctaatg
gaggagctaacgctgaagggagtgactcagtattatgcttatgtaacagaaaggcaaaag
gtccattgcctcaacaccttgttctccaggctccagatcaaccagtcgataatcttctgt
aactcctctcagagagtggagcttcttgccaagaagatttcccagcttggttattcatgt
ttctacattcatgccaagatgagacaggaacatcgcaaccgtgttttccatgactttaga
aatgggctctgccgaaacctggtctgcactgacctcttcacgagaggaattgacattcaa
gctgtgaatgttgtgatcaactttgattttcctaaactgggagagacgtacctccatcgc
attgggagatctggacgctttggccatcttggtttggccatcaacctcatcacgtacgac
gaccgcttcaacctgaaggcgatcgaggagcagctggggacggagatcaagcccatcccc
ggcatcatcgacaagagcctgtatgtggccgagtaccacagcgagagcggcgaagaggtc
aagcagtga
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