Xiphophorus hellerii (green swordtail): 116737518
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Entry
116737518 CDS
T07363
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
116737518 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116737518 (supt5h)
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116737518 (supt5h)
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
116737518 (supt5h)
RNA polymerase I system
116737518 (supt5h)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
116737518 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW5_SPT5
KOW2_Spt5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
DUF150_C
Ribonuc_P_40
DUF6406
Motif
Other DBs
NCBI-GeneID:
116737518
NCBI-ProteinID:
XP_032446599
LinkDB
All DBs
Position
18:complement(1152218..1167410)
Genome browser
AA seq
1085 aa
AA seq
DB search
MSDSEDSDFSDNQSERSSDGEAEEVDENEEEAASPVGSDKVADEEGEDLDDDDEEYDEEE
DEEDDDRPRKKPKHGGFILDEADVDDEDEDEDRWSEGGEDILEKANEEAEASNLDHVVLD
EDHSGSRRLQNLWRDSREEALGEYYMRKYAKSSVGEHYAGGPEELSDDITQQQLLPGVKD
PNLWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPDHVKGYIYVESYKQTHVK
AAIEGIGNLRMGLWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYV
EPSQNTISLKMIPRIDLDRIKAKMSLKDWYAKRKKFKRPAQRLFDAEKIRSLGGEVSHDG
DFMIFEGNRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTESGKERE
HNLQAGDNVEVCEGELINLQGKILSVDGNKITILPKHEDLKDPLEFPAHELRKYFRMGDH
VKVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWG
ELVQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVK
DIVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNF
TVGGFAPMSPRISSPMHHGGGGAQQRGGGGGGGGFGRGRGRRDNELIGQTVRISQGPYKG
YIGVVKDATESTARVELHSTCQTISVDRQRLTTMGAKRHTGSTSAHGRTPMFGSQTPMYG
AGSRTPIYGSQTPMHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPSNPNTPSRNDEEYDFG
FDDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNPEQYSPYAAPSPQ
GSYQPSPSPQSYHQVAPSPVGFQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPS
PGGYNPHTPGSNIEQGSGDWVTTDILVRVKDSFMDLMGQVGVIRSVTGGMCSVFMQDSEK
VVSVSSDHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFL
GRLEH
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacagcgaggacagcgacttttctgacaaccagagcgagcggagcagcgatggg
gaggcggaggaggtggatgagaatgaggaggaggcagccagccctgtgggcagcgataaa
gtagctgatgaggagggggaggacctggatgatgatgatgaggagtatgatgaagaggag
gacgaggaagacgacgaccggccaaggaagaagccgaaacacggagggttcatcctggac
gaagccgatgtggacgatgaagatgaggatgaggatcggtggtcggaaggaggagaggac
attctggagaaagccaacgaagaggctgaagcttccaacctggaccacgtggttctggat
gaagaccactctggatccaggcggctgcagaacctctggagggactccagggaggaggcg
ctgggcgaatactacatgaggaaatacgccaagtcctccgtgggagagcattatgccgga
ggtccagaggagctttctgatgacatcacccagcagcagctacttcctggagtcaaggac
ccaaacctgtggaccgtgaaatgtaagattggcgaggagagggcgaccgccatcgctctg
atgaggaagttcatcgcctaccagttcactgacacgcctctccagatcaagtcggtggtg
gcgcccgaccacgtcaaaggctacatctacgtggagtcgtacaagcagacgcacgtgaag
gccgccatcgagggcatcggcaacctgcgcatgggcctgtggaaccagcagatggttccc
atcaaggagatgaccgacgttctgaaggtcgtcaaggaggtcaccaacctgaagcccaag
agctgggtccggctcaagagaggcctgtacaaggacgacatcgcccaggtggactacgtg
gagcccagtcagaacacaatctccctgaagatgattccccgcatcgacctggaccggatc
aaggccaagatgagtctgaaggactggtacgccaagaggaagaagttcaagaggcctgcg
cagcgcctgtttgatgccgagaagatcaggtctctgggtggggaggtcagccatgatgga
gacttcatgatctttgaggggaaccgttacagtcgcaaaggctttctgttcaaaagcttc
gccatgtccgccgtgatcacagacggagtgaagcccacgctgtcggagctggagaagttt
gaagaccagccagaggggatcgacctggaagtggtcaccgagtcgggtaaggagcgtgaa
cacaacctgcaggccggggacaacgtggaggtgtgtgagggagagttgatcaacctgcag
gggaagatcctgagcgtcgacggcaacaagatcaccatcttgcccaaacacgaagacctg
aaggacccgctggagttccccgcccacgagctcagaaagtacttccggatgggcgaccac
gtgaaggtcattgccgggcgctacgagggcgataccggcctcatcgtcagagtggaggag
aacttcgtcatcctcttctcggacctcaccatgcacgagctgaaggtgctgcccagagac
ctgcagctttgctcggagacggcgtcgggcgtggacgtcggggggcagcatgaatggggc
gagctggtgcagcttgacccgcagacggtgggcgtcatcgtccggctggagagggagacg
ttccaggttctgaacatgcacgggaaggttctgacggtgcgccaccaggcggtgaaccgc
aggaaggacaaccgcttcgccgtggcgctggactccgagcagaacaacatccacgtcaag
gacatcgtgaaggtcatcgacgggccgcactcgggtcgtgaaggggagatccgccatctg
ttccgtggcttcgccttcctgcactgcaagaagctggtggagaacggagggatgttcgtc
tgtaagaccagacatctggttctggccggaggctccaagccgagagacgtgaccaacttc
acggtgggggggttcgccccgatgagcccccggatcagcagccccatgcaccacggcggc
ggaggtgctcagcagaggggcggcggcggaggcggcggaggatttgggcgtggccgggga
cgcagagacaacgagctgattggtcagacggtgcggatctcccagggtccttacaaagga
tacatcggcgtggtgaaggacgcgacggagtccacggcccgcgtggagctgcactccacc
tgccagaccatctctgtggaccgccagaggctgaccaccatgggagcgaagaggcacacc
gggtcgacctcggcccacggacgcacccccatgttcggctcccagacccccatgtacggc
gccggctccaggacgcccatctatggctcccagacgcccatgcacgacggaagccgtacg
cctcactacggctcgcagaccccactgcatgatgggagcaggactcctggtcagagcggc
gcctgggaccccagcaaccccaacacaccttccaggaacgacgaagagtacgacttcggc
ttcgacgacgagccgtcgccgtcgccgcagggctacggcgggacccccaacccccagaca
ccgggttacccagaggtcccctcccctcaggttaacccccagtacaacccccagacccca
ggaacgccggccatgtacaacccggagcagtactcgccatacgcggcgccgtcgccgcag
ggctcctaccagcccagccccagtccccagagctaccaccaggtggcgccctcacctgtc
ggcttccagaacacgcactccccggccagctaccaccccaccccctcccccatggcctac
caggccagcccgagccccagccccgtgggctacagccccatgacgcccggagcgccctct
cctggaggatacaatccccacacccccggatccaacatcgagcaaggcagcggcgactgg
gtgaccaccgacatcctggtccgggtcaaagactccttcatggacctgatgggacaggtc
ggagtgatccggagcgttacgggcgggatgtgctccgtgttcatgcaggactctgagaag
gtggtgagcgtcagcagcgaccatctggaacccgtcaccccgaccaagaacaacaaggtg
aaggtgatcctgggggaggaccgcgaggccacagggatcctgctgagcatcgatggagac
gacggcatcgtccgcatggagctggacgaccagctgaagattctcaacctgcggttcctg
ggccgcctggagcactga
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