Xiphophorus hellerii (green swordtail): 116737520
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Entry
116737520 CDS
T07363
Symbol
ddb2
Name
(RefSeq) LOW QUALITY PROTEIN: DNA damage-binding protein 2
KO
K10140
DNA damage-binding protein 2
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03420
Nucleotide excision repair
xhe04115
p53 signaling pathway
xhe04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116737520 (ddb2)
09124 Replication and repair
03420 Nucleotide excision repair
116737520 (ddb2)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
116737520 (ddb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116737520 (ddb2)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116737520 (ddb2)
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
116737520 (ddb2)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
116737520 (ddb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
Beta-prop_EML_2
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML
Beta-prop_EIPR1
EIF3I
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
Beta-prop_Vps41
SLS1_C
Motif
Other DBs
NCBI-GeneID:
116737520
NCBI-ProteinID:
XP_032446608
LinkDB
All DBs
Position
2:complement(8094351..8100963)
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AA seq
490 aa
AA seq
DB search
MKSKPTKSQANGSKSKVKKGAAEHTSLSKKLRDKIDGETSKAGPSYSSAGAQRKTGPGSI
LHYIYRSTLGQSLHSQMRQCLQEPFVRSLSSYHFHGASSPFDRRITCLEWHPTHPTTVAA
ASKGGDIFLWDFEKSETKSFTRGNGAGDFIGGMKFCPTDFSRVYAASGEGKLTLHSFEGH
TPTLLSRTQDCSHDHHNVCFWYCCVDVSVSRQMLVTGDNMGELLLLGLDGKKIFSSKLHK
AKVTHAEFNSRCDWLLATASVDHTVKLWDLRNIQDKKSFLYEMPHEKAVNSAYFNPLDAS
KLLTTDQHDQIRVYSSSDWSKPQHIIQHPHRQFQHLTPIKATWHPLYDLIVAGRYPDDRI
CTGDQRSIDVFDSNSGELVFQMYDSTASGIKSINKFSPMGDVIASGMGVTLLIWDHDESL
VSGRHKPIEETSAAADGVRGQRRGQQRSGRDRRGPTGDAKLKKKLASLEETEAKTKTGCT
KQKQTQKRKL
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcaagcccaccaagtcacaggcaaatggatcaaaaagtaaagtgaagaaagga
gctgcagaacacacgtcgctgagtaaaaaactgcgagacaagatagatggagaaacatct
aaagcggggccttcttacagttctgcaggagcccagaggaagactggccctggaagtata
ctgcactacatatacaggagtactttgggccagagtctgcactctcagatgagacagtgt
ctccaggagccgtttgttcgatctctgtcatcctaccattttcatggcgccagcagtcca
tttgatcgcagaatcacctgcttggagtggcaccccactcatcccaccactgtggctgca
gcctcaaaagggggggacatttttctgtgggactttgagaagtctgaaacaaaaagcttt
actcgagggaacggagcgggagacttcattggcgggatgaagttttgccccacagacttc
tccagagtttatgcggcttctggcgaggggaagttgaccctgcatagctttgagggccac
actcccaccctgctgtccagaacacaagactgcagtcatgatcaccacaatgtttgcttt
tggtactgttgtgtcgacgtgtctgtgagtcggcagatgcttgtgactggggacaacatg
ggagagcttctacttctgggtctggatgggaaaaagattttcagcagtaagttgcacaaa
gccaaagtgacacatgcagagtttaactcccgatgcgactggttgctggcgacggcctcg
gttgatcacacagtgaagctctgggatctgaggaacatccaggacaagaagagcttcctc
tacgaaatgcctcacgagaaagccgtcaactcagcctatttcaaccctttggacgcctcc
aagctgctcacaacagatcagcacgaccagatccgcgtgtactcctcctctgattggtca
aagcctcagcacatcattcagcacccacacaggcagtttcagcacctcacacctatcaag
gccacctggcatcccctgtatgacctgattgtggcgggccgataccctgatgaccgcatc
tgcaccggagatcagaggtccattgacgtctttgactccaacagtggggagttggtgttt
cagatgtatgactccactgcctcagggatcaaatcgatcaacaagttcagtccaatgggt
gacgtcatcgcatctggaatgggtgtaacactactgatctgggaccacgatgagtcgctg
gtcagcggccgacacaaaccgatcgaggaaacgtcggctgcagcagacggggtcagaggt
cagcggaggggtcagcagcgctctggcagagaccgaaggggtccgaccggggatgcaaag
ctaaagaaaaagctagcttctctggaagaaaccgaggccaaaaccaaaaccgggtgcacc
aaacaaaaacaaactcagaagaggaaactgtag
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