Xiphophorus hellerii (green swordtail): 116737677
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Entry
116737677 CDS
T07363
Name
(RefSeq) hypoxia-inducible factor 3-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04137
Mitophagy - animal
xhe04140
Autophagy - animal
xhe04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116737677
04137 Mitophagy - animal
116737677
04148 Efferocytosis
116737677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xhe03000
]
116737677
Transcription factors [BR:
xhe03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
116737677
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
116737677
NCBI-ProteinID:
XP_032446916
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All DBs
Position
18:complement(4892295..4911501)
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AA seq
651 aa
AA seq
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MEKEDGVVAVKRSSSEQRKLRSRDAARCRRSQETEVFYELARTLPLPRRVCTHLDKAGIM
RVTLSFLRMQQLLQPEESVKKEEEEDEDPMDAFFPQALAGFVMVMTEEGDMVFLTENVNK
HIGITQLELLGQSVYDFIHPCDQEELRDLLTPRPGLSKKLMAEQPSERNFFLRMKSTLTS
RGRTVNIKSATWKVLHCTGHIRPFGSASPPAARVMTLLCEPIPHPSSVEFPLDSCTFLTR
HTMDLHFTHCEGRVTELVGYKPEDLIGRSAYEFYHALDSDRIKKSLLTLLSKGQVNSSPY
RFLANCGGFVWAETQATVLYSKTSQPEAIVCLNFILSAVEQPDVVFSVEQTRCSLLPKTE
PSSPERAAEDSGISDTCDSDGEDAGSSAKLLLKLTEKPEELLQLPDGGDGVAPALTAGRV
ELSFASPPSPDVVPDHPKDLCSPQLRQLLSPIFDGLNPSSSPAASSEPDLSPCEEEVMDT
SEVERFFTICPEETQLKEQAIEDVEGKELEMYAPYISMDDDFQLTFLSSLPQEANKPASL
LFQGADGIPAVTVSRKRTHDLDKEPPPLLMIQDKRHKPDPSSIEEELLLSNRLLGSLEDG
DQPDLILDSGRSQLLTDRDPVLSELCDTAALMRDIFVPRPADLSPPLSPMT
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggaagacggggtcgtggcggttaaacggagcagctcggagcagaggaagctc
cgctctcgcgatgcggcccgctgccggcgcagccaggagaccgaggtgttctacgaactg
gcccggaccctgccgctgccgcgccgagtctgcacccacctggacaaggccggcatcatg
agggtgacgctcagcttcctgcggatgcagcagctcctgcaacccgaagagagtgtgaag
aaagaggaggaggaggatgaagatccgatggacgctttctttccccaggccttggcaggc
ttcgtcatggtgatgaccgaggagggggacatggtgttcctgacggagaacgtcaacaag
cacatcggcatcacgcagctggagctgctcggccagagcgtctacgacttcattcatccc
tgcgatcaggaggagctgcgagacctcctgactccgcgtccaggtctgagtaagaagctg
atggcggagcaaccgagcgagagaaacttcttcctgcgaatgaagagcaccctgaccagc
agggggcgcaccgtcaacatcaaatctgccacctggaaggttctccactgcacgggccac
atccgcccctttggctcagcgtcgccccctgctgccagagtgatgacgctgctgtgcgag
ccgatcccccacccgtccagcgtggagttccctctggacagctgcaccttcctcacccgc
cacaccatggacctgcacttcacccactgcgagggcagggtaacggagctggtgggctac
aaaccggaggacctgattggacgctcggcctacgagttttatcacgcgctcgactcggat
cgcatcaagaagagcctgctaacacttctctccaaaggccaggtgaactcttccccctac
cgcttcctggccaactgcggcggcttcgtgtgggccgagactcaagccaccgtcctctac
agcaagacgtcgcagcccgaagccatcgtctgcctcaacttcatcctcagcgcggtggag
cagccggacgtggtgttctccgtcgagcagacccgctgcagcctcctgcctaaaaccgag
ccctcctccccggagcgcgccgccgaggacagcggcatctccgacacctgcgactcggac
ggcgaggacgccggcagctcggcgaagctcctcctgaagctgacggagaaaccggaggag
ctgctgcagctgccggacggcggggacggcgtggcgccggcgctgacggcaggtcgggtg
gagctgtcgttcgccagtcctcccagtccagacgtggttccggaccatcctaaggacctg
tgcagccctcagctgcggcagctgctgtcgcccatctttgacggcctgaatccgtcctcg
tccccggccgcctcctctgagccggacctgagcccctgtgaggaggaggtgatggacacc
agcgaggtggagcgcttcttcaccatctgcccggaggaaacgcagctcaaggaacaagcg
attgaggacgtggaggggaaggagctggagatgtacgcgccgtacatctccatggacgac
gacttccagctcaccttcctcagcagtctgccgcaggaagccaacaaacccgcgtcgctg
ctgttccagggcgccgatgggattcctgccgtcacagtcagcaggaagaggactcacgac
ttggacaaagagccgccgcctctgctgatgatccaggacaagagacacaagccggacccg
tcctccatagaggaggagctgctgctcagcaacaggctgctgggttcgctggaagacggc
gaccagccggatctgattctggactccggacgcagtcagctactcacagacagagacccg
gttctgtcagaactgtgcgacactgcagctctgatgagggacatcttcgtccctcgcccg
gctgatctgtcgccgccgctctcgcccatgacctga
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