Xenorhabdus hominickii: A9255_04615
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Entry
A9255_04615 CDS
T04538
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xho
Xenorhabdus hominickii
Brite
KEGG Orthology (KO) [BR:
xho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xho03019
]
A9255_04615
Enzymes [BR:
xho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A9255_04615
Messenger RNA biogenesis [BR:
xho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A9255_04615
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
WHD_HA2
NACHT
AAA_11
ResIII
nSTAND_NTPase5
PhoH
T2SSE
AAA_23
ABC_tran
TsaE
RsgA_GTPase
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AOM39919
UniProt:
A0A2G0Q3A9
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All DBs
Position
971958..975863
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AA seq
1301 aa
AA seq
DB search
MESPLTAPFAELFAELDHTSLRDQFRLKKRLHGAVKIKNQSSLQAVVQSISEDIAAAKQK
VTNRQAACPAINYPENLPVSQKKDDIYKAIQNNQVVIIAGETGSGKTTQIPKICLELGRG
VKGLIGHTQPRRLAARSVANRIADELETSLGSTVGYKVRFNDQVSENTLVKLMTDGILLA
ELQQDRLLLQYDTLIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPVAGDDNDTDRDQLEAIIDAVDELGRESSGDILVFMSGE
REIRDTADALNKQNFPHTEILPLFARLSNSEQNRIFQSHVGRRIILATNVAETSLTVPGI
KYVIDTGFARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSDGICIRLYAEDDYLSR
PEFTDPEILRTNLASVILQMTSIGLGDVSAFPFVEAPDKRNIQDGVRLLEELGAIDPESL
SEGAYRLTTMGRQLAQLPIDPRLARMVLEARAHGCVREVMVITSALSIQDPRERPLEKQQ
ASDEKHRRFADKDSDFIAFLKLWDFLIEQQKALSSSQLRKLCRQDYLNYLRVREWQDIYA
QLRQVVKELGIPINSQEADYQSIHIALLTGLLSHIGQKDTDKQEYTGARNARFSIFPGSG
LFKKPPKWGMVAELVETSRLWGRIAARIEPEWIEPLAAHLIKHHYSEPHWQKSQGAVMAT
ERVTLYGLPIVTGRLINYSQFDPMLCRELFIRHALVEGDWQTRHSFFRANLKLREEVEEL
EHKSRRRNILVDDETLFSFYDQRIGNDVVSSRHFDHWWKLTSKDQPELLNFEKSMLIKGD
ADKVSALDYPNYWHQDNLKFRLSYQFEPGTDADGVTVHIPLPVLNQVKDEGFDWQIPGIR
HELVVALIKSLPKPVRRNFVPAPNYAQAFLERVTQPQTTLLDSLEKELRRMTGVTVSRDD
WQLEQVPDHLKITFRVLNEKNKPLAEGKDLSALKLKLKGKVQETLSAVADDGIEQSGLHI
WSFGELPECYEQKRGGYSVKAFPALVDEKDSIGIKLFETESEQQNAMWEGTRRLLLMNIP
SPIKYLHEKLPNKSKLGLYFNPYGKVLDLIDDCISCGVDRLTAENGGPAWNEQAFSCLQD
KVRADLNDAVVDIAKQVEQILTAVFAINKRLKGRVDIALALALSDIKEQISGLVFNGFVT
AHGWKRLADVLRYLNGIERRLEKLAIDPNKDRAHMSRIENIQRLWQQWQAKLTIQQKQLP
EVKEVRWMIEELRISLFSQQLGTAYPISDKRILQTMENIAS
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
gtggaatcacctttgacagcacctttcgctgaattattcgctgaacttgatcacacatcg
ctgcgagatcagttccgtttgaaaaaacgtctgcatggagcagtaaaaattaagaatcaa
tcctccttgcaggctgtcgtacaatccatttctgaggatattgccgcagcaaaacagaaa
gtcactaatcgccaagcggcatgtcctgcaattaactaccctgaaaacctacctgttagc
cagaagaaagacgatatttacaaagctattcagaataatcaggttgttatcattgccggg
gaaactggttcgggtaagacgacccaaattccaaaaatctgtcttgaattgggtagggga
gttaaagggctgatcggtcatactcaacctcgtcgtttggcggcccgttccgttgctaac
cgtattgcggatgagctggaaacatcgcttggttcgacggtgggttataaagtccgtttt
aatgatcaagtcagtgaaaatactttggtcaaattgatgactgacggtattttgctggcg
gaattacagcaagatcgcttgctgttgcaatacgatacattgattatcgatgaggctcat
gagcgcagcctgaatattgattttattcttggctacctgcgtcaattattgccgaaacgt
cctgatctgaaagttatcattacttctgcaaccattgatcctgaacgtttttcacgtcat
ttcaacaatgcaccgattattgaagtgtctgggcggacttatccggtagaagtacgttac
cgtccagtggcgggtgacgataatgacactgatcgtgatcagcttgaggccatcattgat
gctgtagatgaattggggcgtgaaagctcaggcgatatattagttttcatgagtggtgaa
cgggaaatccgtgatacagcagatgctctcaataagcagaatttcccgcatactgaaatt
ttgccactctttgcgaggctgtcaaacagcgagcagaatcgcatttttcagtctcatgtt
gggcgccggattatcttggcaaccaatgtagcggaaacatcactgacagtacctggtatc
aaatatgtgattgataccggttttgcgcgtattagccgttacagttaccgaaccaaagta
caacgtttgccaattgaacctatctctcaggcatcagccaatcagcggaaagggcgttgt
ggccgtgtttcagacggtatttgtattcgtctctatgcggaagatgactatttatcacgt
ccagaatttactgatccagaaattctgcgtaccaatctggcctctgttattttgcagatg
acttcgattggcttgggagatgtcagcgcattcccctttgttgaagcgcccgacaaacgc
aatattcaagacggtgtccgcctgttggaagagttgggagccattgatcctgaatcactg
tcagagggggcttaccgtttgacgacaatggggcggcaattggcacagttacccatcgat
ccgcgtttggcccgcatggtattggaagctagagcacacggttgtgtccgtgaagtcatg
gtgatcacatcggcgttgtcgattcaagacccacgggaaagaccactggaaaaacaacag
gcatctgatgaaaaacatcgtcgttttgccgacaaagattccgatttcattgccttcctg
aaattatgggattttctgattgaacagcagaaagcgctttccagctcccagctccgtaaa
ctttgccgtcaggactatctgaactatcttcgggtcagagaatggcaggatatttatgct
caacttcggcaggttgtaaaagaactaggtataccaattaacagtcaggaagcggattat
cagagcattcatatcgctttgctgaccggtttgctatcccatattgggcagaaagacacg
gataaacaggaatatactggtgctcgcaacgctcgtttttcgatttttccgggttcaggc
ttatttaaaaagccacccaaatgggggatggttgctgaattagtggaaaccagccgatta
tgggggcgtattgccgcacgtatcgaaccggaatggatagaaccactggctgctcattta
attaagcatcattacagtgaaccacactggcagaaatcacagggcgcggtgatggcaaca
gaaagagtgactctgtatggtttgccgattgtgacagggcgtttgatcaattatagccag
tttgatcctatgttatgtcgcgaactgtttatccgtcatgcactggttgagggtgattgg
cagacacgtcactcatttttccgcgctaaccttaaattgcgtgaagaggttgaagagctg
gaacataaatcccgtcgacggaatattttggtagatgatgaaactctgttcagtttctat
gaccaacgtattggcaacgatgtcgtttcgtctcgccattttgatcattggtggaaattg
acgagtaaagatcagccggaattgctgaactttgaaaagagcatgctgatcaagggagat
gccgataaagtcagcgcattggattatccgaattattggcatcaggataatttgaaattc
cgtttgagctaccaatttgaaccgggaactgatgctgatggcgttactgtgcatattcca
ttgccagtcttgaatcaagttaaagatgaaggattcgactggcaaattccgggtattcgc
catgaattggttgttgcattgatcaaatcattaccgaaaccagtacgccgtaattttgta
cccgcccctaactatgcgcaggcatttttggagcgggtcacacagccacaaactacgttg
ttggatagccttgagaaagagctacgccgtatgacgggagtgacggtgtcacgtgatgat
tggcagttggagcaggtgcctgatcatctgaaaatcaccttccgcgttcttaatgagaaa
aacaagccattagcagaaggcaaagatctctcagcactaaaactaaaattgaaaggcaag
gttcaggaaacactttcggctgttgcggatgatggtattgaacaaagcgggctgcatatt
tggagttttggggaattacctgagtgctatgaacaaaagcgtggcggttactcagttaag
gcttttcctgccttagtggatgaaaaagacagcattggcattaaactgttcgaaaccgaa
tccgaacagcaaaatgcgatgtgggaaggtacacgccgcctgttattgatgaatattcca
tcaccgattaaatatctgcatgaaaaattaccaaacaaatccaaactgggtttgtacttc
aacccatatggaaaagtgttggatctgattgatgattgtatttcctgtggcgtggataga
ttaactgcggaaaatggtgggccggcttggaatgaacaagcattttcctgtttgcaggat
aaagtgcgtgctgatttgaatgatgcagtcgttgatattgctaaacaggtggaacagatc
ctgacggcagtctttgccattaataaacgtctgaaagggcgggtggatattgcgcttgca
ctcgcgttatcggatattaaagagcaaatttctggcttggtctttaatggcttcgtgacc
gcccacggttggaagcgtttggctgatgttttgcgttatctgaatggtattgagcgccga
ttggaaaaattggcaattgatcctaataaagatagagcacatatgagccggattgaaaat
atccaacgcttgtggcagcaatggcaagcaaaactcactattcagcagaaacaattacca
gaagtgaaagaagttcgctggatgatagaagaacttagaatcagcttgttttctcagcaa
ttggggacggcatatccaatatcagataagcgtattttgcagacaatggaaaatatcgca
tcatga
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