Xenorhabdus hominickii: A9255_13475
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Entry
A9255_13475 CDS
T04538
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xho
Xenorhabdus hominickii
Brite
KEGG Orthology (KO) [BR:
xho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xho03016
]
A9255_13475
Enzymes [BR:
xho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A9255_13475
Transfer RNA biogenesis [BR:
xho03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A9255_13475
Prokaryotic type
tRNA splicing ligases
A9255_13475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
GIL1_IRKI_C
Motif
Other DBs
NCBI-ProteinID:
AOM42893
UniProt:
A0ABN4S8P6
LinkDB
All DBs
Position
complement(2943611..2944837)
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AA seq
408 aa
AA seq
DB search
MKTNAYNLLTQENGAPVKMWTNGVPVDPKAIIQLQNTAKMPFVFKHLAVMPDVHVGKGST
IGSVIPTRGAIIPAAVGVDIGCGMIAVRTSLVASDLPDSLLNIRHAIEAAVPHGRTVNRG
SRDKGSWNKAPEIVDQHWATLADGFKCITDKYPKLLNTNNHQHLGTLGTGNHFIELCLDE
ADRVWVMLHSGSRGVGNAIGNLFITLAQQDMQQHIANLPDRDLAYFEEGSRYFDDYMEAV
SWAQDYARQNREVMMHRALEALSREIPKPFTTQQEAVNCHHNYVQREQHYGEDVLVTRKG
AVSARKGQMGIIPGSMGAKSYIVRGLGNEESFCSCSHGAGRIMSRTEAKKRFTVSDQKRA
TAHVECRKDSDVIDEIPMAYKDIDAVMEAQSSLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccaacgcttataacttattgacgcaagagaatggcgcacctgtaaaaatgtgg
acaaatggagttccggttgatccgaaagccattattcaattgcaaaacaccgccaaaatg
ccttttgtgttcaaacatctggcagtaatgccggacgtgcatgtcggtaagggttctacg
attggtagcgtgatcccgacacgcggtgccattattccggctgcggttggggtggatatt
ggttgtggaatgattgcggtgcgtacttcactggtagcgtctgatttgccggatagcctg
ttgaatatccgccatgccatcgaagccgctgtaccacatgggcgtaccgtgaatagagga
agccgcgataaaggatcttggaataaggcaccggagattgtggatcaacattgggcgacg
ttggcggatgggtttaagtgtattaccgataaataccccaaattgttgaacactaataac
catcagcatttgggaacactgggaacggggaaccattttatcgagttatgccttgatgaa
gcggatcgtgtttgggtaatgctgcatagcggttcccgtggtgtaggtaacgctatcggt
aatttgtttatcacactggcgcagcaagatatgcagcagcatatcgctaacctgccagat
cgcgacttggcgtatttcgaggaaggaagccgctattttgacgattatatggaagcagta
agttgggcgcaggattacgcccgtcaaaaccgggaagtgatgatgcaccgtgcgctggaa
gcgttgtcacgtgagatcccaaaaccctttacgacacagcaggaagcggtgaattgccac
cataactatgtgcagcgcgagcagcattatggtgaagatgttctggtaacacgtaaaggt
gcggtatctgcccgtaaaggccagatggggattattccgggttcgatgggagcgaaaagt
tatatcgtccgtggtcttggaaacgaagagagtttttgttcatgcagccacggagcgggg
cgcataatgagccgtaccgaggcgaaaaaacgctttaccgtcagcgatcaaaaacgggct
actgcgcatgtagaatgccgtaaagacagcgatgtgatcgacgaaattccaatggcgtac
aaggatatcgatgccgtaatggaagcgcagtcatcgctggtggaaatcgtgcataccctg
cgtcaggtggtgtgtgtaaaaggataa
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