Xanthomonas hortorum: XJ27_00455
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Entry
XJ27_00455 CDS
T05082
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xhr
Xanthomonas hortorum
Pathway
xhr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XJ27_00455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhr03400
]
XJ27_00455
Enzymes [BR:
xhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XJ27_00455
DNA repair and recombination proteins [BR:
xhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XJ27_00455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ASW44606
LinkDB
All DBs
Position
complement(113124..116594)
Genome browser
AA seq
1156 aa
AA seq
DB search
MPSPTTFPSPPLPKSGQLRAYWRAPSSPTALAWSIARAAEAHAGPLLVIARDNQSAHQIE
SDLHALLGEHASLPVVPFPDWETLPYDQFSPHPEIISQRLAALHRLPTLTRGVVIVPVQT
LMQQLAPLSYIVGGSFDLKVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVF
PMGEATPLRVELLDEDIDSIRAFDPESQRSLDKVDAVKLLPGREVPMDDASIERVLACLR
ERFDVDTRRSALYQDLKSGLAPSGVEYYLPMFFSKTATLFDYLDKRTLPLIATGVSNAAD
TFWAQAQDRYEQRRHDVERPLLTPDELYQSPDALRERLNKLARIEVWASDHPRIDEAAAL
GDQPLPPLPVAAKDAPAGQALASFLSHYPGRVLVASDSAGRREALMEVLAAAQLKPEVVA
DLPAFLAAPKLRFGITVAPLEDGFALDTPQIAVLTERQLFPERANQPRRTRRVGREPEAI
IRDLGELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVAQLHLIS
RYSGASAETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRRARAGLALQVDRAMY
EPFAAGFPFEETPDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGK
QVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGT
HRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGL
RDLSIIATPPPNRLAVQTFITAWDNALLREAFQRELSRGGQLYFLHNDVESIVRMQRDLS
ELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADR
FGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSITADAEKRLEAIASMDELGAGFTLATHDL
EIRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGNLPDLDAGDEVRGAEVELHVA
SLIPADYLPDVHTRLTLYKRISSARNSDALRELQVEMIDRFGLLPDPVKHLFAIAELKLQ
ANALGVRKLDLGENGGRLVFEAKPAIDPVAVIQMIQKQPKIYTMDGPDKLRIKLPLPEGA
DRFNAARGLLTMLAPR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgccaaccaccttcccctctccgccgctgcccaagtccggccagcttcgtgcc
tattggcgcgccccgtcttcgccgactgcgctggcctggtcgatcgctcgcgccgccgag
gcgcatgccggcccgctgctggtgatcgcacgcgataaccagagtgcgcaccagatcgaa
tcggatctgcatgctctgctcggcgaacacgccagcttgccagtggtgccgtttcctgat
tgggaaaccctgccctacgaccagttcagcccgcacccggaaatcatcagccagcgtttg
gctgcgcttcaccgtttgcccacactgacccgtggcgtggtgatcgtgccagtgcagacg
ctgatgcagcagctggcaccgctgagctacatcgtcggtggcagcttcgatctcaaggtc
ggccagcggctggatctggatgcggaaaaacgccgcctggaaagcgccggctaccgcaac
gtgccgcaggtgatggacccgggcgatttcgcggtgcgtggcggcttgctggacgtgttt
ccgatgggcgaagccacgccgttgcgcgtggagctgctggacgaggatatcgactcgatc
cgcgccttcgacccggaatcgcagcgctcgctggacaaggtcgatgcggtcaaattgctg
cccggccgcgaagtgccgatggacgatgccagcatcgaacgcgtgctggcctgcctgcgc
gaacgcttcgatgtggatacccggcgcagcgcgctgtatcaggatctgaagtcgggcctg
gcgccgtcgggcgtcgagtattacctgccgatgttcttcagcaagaccgccaccttgttc
gattatctggacaagcgcacgctgccgttgatcgccaccggcgtgtccaacgcggccgat
acgttctgggcgcaggcgcaggaccgctacgagcaacgccgccacgatgtggagcgcccg
ctgctgacgccggacgagctgtatcaatcgccggatgcattgcgcgagcggctcaacaag
ctggcccgcatcgaagtctgggccagcgaccatccgcgcatcgacgaggccgccgcgctt
ggcgaccaaccgttgccgccgctgccggtggcggcaaaagacgcccctgccggtcaggcg
ctggcctcgttcctgagccattacccgggccgcgtgttggtggcctccgattcggccggt
cgccgcgaagccttgatggaagtgctggccgccgcgcaattgaagccggaggtcgtcgcc
gatctgcccgccttcctggccgcgcccaagctgcgcttcggcattaccgtggcgccgttg
gaagacggctttgcgctggacaccccgcagattgcggtgctgaccgagcgccagctgttt
cccgagcgggccaaccagccgcgtcgcacgcgacgtgtggggcgcgagccggaagcgatc
atccgcgatctgggcgagttgtccgaaggcgcgccgatcgtgcatgaagaccacggtgtg
ggccgctatcgcgggctgatcgtgctcgatgccggcggcatgcccggcgagttcctggaa
atcgaatacgccaagggcgaccggctgtatgtgccagtggcgcagctgcatctgatcagc
cgttattccggcgcctcggccgagaccgcaccgttgcattcgctgggcggcgagcaatgg
accaaggccaagcgcaaggcggccgaaaaagtgcgcgacgtggcggccgagttgctggaa
atccaggcccgccgacgcgcacgtgccggtctggccttgcaggtggaccgtgcgatgtac
gagccgttcgcggccggtttcccgttcgaagaaacccccgaccagttggccgccatcgat
gccacgttgcgcgatctgggcagcagccagccgatggatcgcgtggtctgcggcgatgtg
ggcttcggcaagaccgaggttgcggtgcgcgccgcgttcgctgcggccagcgccggcaag
caggttgctgtgctagtgccgaccacgttgctggccgagcagcattaccgcaatttccgc
gaccgcttcgccgattacccgatgaaggtggaagtgctctcgcgcttcaagagcaccaag
gagatcaaggccgaattggagaaggtcgccagcggcgatatcgacgtcatcatcggcacg
caccgcctgctgcagccagacgtgaagttcaaggatctgggcctggtcgtcgtcgacgaa
gagcagcgcttcggcgtgcggcagaaggaagcgctcaaggcgatgcgcgccaacgtgcat
ctgctcacgctcaccgcaacacccatcccgcgcacgctgaatatggccatggccggcttg
cgcgacctgtcgatcattgccaccccgccgccgaaccgcttggccgtgcagaccttcatc
actgcctgggacaacgcattgttgcgcgaggccttccagcgcgagctcagtcgtggcggg
cagctgtatttcctgcacaatgatgtggaaagcatcgtgcgcatgcagcgcgacttgtcc
gaactggtaccggaggcgcgcatcggcatcgcgcatgggcagatgcccgaacgcgagctg
gagcgggtgatgctggatttccagaagcagcgcttcaatgtgttgctgtcgaccacgatc
atcgaatcgggcatcgacattcccaacgccaacaccatcatcatcaaccgcgccgatcgc
ttcggcctggcccagttgcatcagttgcgcggtcgcgtcggtcgttcgcatcaccgcgct
tacgcgtatctggtggtgccggaccgtcgctcgatcaccgccgatgccgagaagcgtctg
gaagcgatcgcctccatggacgagctcggcgccggcttcaccctggccacgcacgatctg
gaaatccgcggcgccggcgagctgctgggcgaagaccagagcgggcagatggccgaggtc
ggcttcagcctctacaccgagctgctggaacgcgcggtgcgcagtattcgccagggcaac
ctgcccgatctggatgccggcgacgaagtgcgcggtgccgaggtcgagctgcatgtggcc
tcgttgatccccgcagattatctgcccgacgtgcacacccggctgacgctgtacaagcgt
atctccagtgcgcgcaacagcgatgccctgcgcgagttgcaggtggagatgatcgaccgc
ttcggcctgctgccggatccggtcaagcatctgttcgccattgccgagctcaagctgcag
gccaatgcgctgggtgtgcgcaagctggatctgggcgaaaacggcggccgtctggtcttc
gaagcaaaaccggcgatcgacccggtggcggtgatccagatgatccagaagcagcccaag
atctacaccatggacggcccggacaaactgcgcatcaagctgccgctaccggaaggtgcg
gatcgtttcaacgctgcgcgtggcttgttgacgatgctggcgccgaggtaa
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