Xanthomonas hortorum: XJ27_01340
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Entry
XJ27_01340 CDS
T05082
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
xhr
Xanthomonas hortorum
Pathway
xhr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
XJ27_01340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhr03400
]
XJ27_01340
Enzymes [BR:
xhr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
XJ27_01340
DNA repair and recombination proteins [BR:
xhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
XJ27_01340
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XJ27_01340
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
XJ27_01340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Herpes_ICP4_N
Motif
Other DBs
NCBI-ProteinID:
ASW44761
LinkDB
All DBs
Position
complement(316442..317887)
Genome browser
AA seq
481 aa
AA seq
DB search
MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFYVQPADDLLPSPYATMV
TGITPQHALREGVSEAEAFARISEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER
EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSD
VYATIGMARRFQQHQPKLWEYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRMCAAAV
LPLTRHPRIDSRVIVFDLEGDPEVLLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK
SPALVAWQHLREADFQRLGIDHDAVLAKAARLRELGPELAEKVRQVYGNERAAAPAVNDA
DASLYDGFLAEGDKRLLAQVRASAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFEE
QERWNVYRRQRLLEDRGLGEVTLDQFHAQIADLRLAHPDDATKQALLDQLAAWGSDLQRT
L
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacagctttctcttctacgacctggaaaccttcggccaggatccgcgccgcacg
cgcatcgcgcagttcgccgccgtgcgcaccgatgcgcaactgcgcgtgatcgaagaaccg
atcagtttctacgtgcagccggccgacgatctgctgccctccccgtacgcgaccatggtc
accggcattaccccgcaacacgccctgcgcgaaggcgtgagcgaggccgaagcgtttgcg
cgcatttccgaacagatgagccggccgcagacctgcacgctgggctacaactcgatccgc
ttcgacgacgagttcgtgcgctgcggtctgttccgcaatttctacgatccctacgagcgc
gagtggcgcggcggcaattcgcgttgggatctgctcgatgtgttgcggctggtgcatgca
ctgcgcccggacggcatcgtctggccgcagcgcgaagacggggccacttcgttcaagctc
gaacacctggccgatgccaacgcggtgcgcgaaggcgatgcgcacgaggcgttgtcggac
gtgtacgccaccatcggcatggcgcgcagattccagcaacatcaaccgaaattgtgggag
tacgcgctgcgtctgcgcgacaagcgctttgcggcgacgttgctggatgtcatcgccatg
cagccggtgctgcatatttcgcagcgctatcccgcctcgcgcatgtgcgccgccgcagtg
ctgccgctgacgcgccatccgcgcatcgacagccgcgtgatcgtgttcgacctggaaggc
gacccggaggtgctgttgcgcctgagcccggatgagatcgccgaccggttgtatatccgc
gccgccgacctgcccgaaggcgagcagcgcattccgctgaaagaagtgcatctgaacaag
tcgccggcgttggtggcctggcaacacttgcgggaggcggatttccagcgcctgggcatc
gaccacgacgcggtgttggccaaagccgcgcgcctgcgcgaactcggccccgagctcgcc
gaaaaagtgcgccaggtgtacggcaacgagcgcgctgcggcaccagcggtcaacgacgcc
gatgcctcgctctacgacggcttcctggccgaaggcgacaagcgcctgctggcgcaggtg
cgtgccagcgcgccggccgaactgggcgcgctggaatcgcgctttcgcgacccacgcctg
atcgagttgctgttccgctaccgcgcgcgcaattggccgcaaacgctgtcgttcgaagag
caggaacgctggaacgtgtaccgccgccagcgcctgctagaagaccgtggtttgggcgaa
gtcacgctcgaccagttccatgcgcagatcgcggatttacggcttgctcaccccgacgat
gctaccaagcaagccctactcgaccagctcgccgcctggggttcggacctccaacgcacg
ctatga
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