Xanthomonas hortorum: XJ27_03270
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Entry
XJ27_03270 CDS
T05082
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
xhr
Xanthomonas hortorum
Pathway
xhr02020
Two-component system
xhr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xhr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
XJ27_03270
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
XJ27_03270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhr03021
]
XJ27_03270
Transcription machinery [BR:
xhr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
XJ27_03270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_3
HTH_IclR
HTH_23
HTH_31
Sigma70_r4
HTH_Crp_2
HTH_38
Phage_CII
DUF5429
Motif
Other DBs
NCBI-ProteinID:
ASW45107
LinkDB
All DBs
Position
complement(790675..792078)
Genome browser
AA seq
467 aa
AA seq
DB search
MKTTISAQLGQQLHLTPQLLQSIRLLQLDGMQLELEIRRALETNPLLELEELADSSDDAA
TSDDGASDIAAFDELPESTMWDVQSSNWNDGDDDRMQRVAAGESTDPHVRILRELALDLD
EAALAAAAFWLEQTDDAGYLSEALATLQQLGATRLGMTVQAVEAIRQRLLHGDPAGLAAC
DLRECLQAQLSALPGRVPARHLAARILSGDLELLASHDYALLARAHDAELDDAREAVRLI
LSLQPRPGDDLLQESNASVIPDVLAWHADGSWRVALNPATTHRVSINPVHERALAEAGEA
AQPLRDMLQEARWLTRGLSMRYETLLRATRAIVERQAAFLVRGEEAMAPLTLKEIADEIG
MHESTISRITTGKYIQTPRGTFELKHFFAVRLEGASVSGQAVKAMVRRLIESEPAGRPLA
DEAIAGLLSRQGVNIARRTVAKYREQLDIAPARERRRINKPLLARAG
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgaccatttccgcccagcttggccagcaactgcacctgaccccgcagttgctg
cagtcgatccgtctgttgcaattggacggcatgcagctggagctggaaatccgtcgcgcg
ctggaaaccaatccgctgctggagctggaagaactggccgacagcagcgacgacgccgcg
accagcgatgatggcgcctcagatatcgccgccttcgacgagctccccgagagcacgatg
tgggatgtgcaaagcagcaactggaacgatggcgacgacgaccgcatgcagcgcgttgcc
gctggcgaatccaccgacccgcatgtgcgcatcctgcgcgaactggcgctggacctggac
gaggccgcattggcggccgccgcgttctggttggagcagaccgacgacgccggctatctg
agcgaagcgttggcgaccctgcagcagctcggcgccactcgcttgggtatgaccgtgcag
gcagtggaagcgatccgtcagcgcctgctgcacggcgacccggccggcctggccgcctgc
gatctgcgcgagtgtctgcaagcccagctgagcgccctgcccggccgcgtgccggcacgc
catctagctgcgcgcattctgtccggcgatctggaattgctggccagccacgactacgcg
ttgctggcacgcgcacacgacgccgagctcgacgatgcgcgcgaagcagttcgcctgatc
ctctcgctgcaaccgcgtccaggcgacgacctgctgcaggagagcaacgccagcgtgatt
ccggatgtgctcgcatggcatgccgatggcagctggcgcgtggcattgaatccagccacc
acgcatcgcgtgagcatcaatcccgtgcacgaacgcgcactggccgaggccggcgaagcc
gcccagccgctgcgcgacatgctgcaagaagcgcgctggctgacccgtggcctgtcgatg
cgctacgagaccttgctgcgtgccacgcgcgccatcgtcgagcgtcaggctgcgtttctg
gtgcgtggcgaagaagccatggcaccgctgacgctgaaggaaatcgccgatgagatcggc
atgcacgagtcgacgatttcgcgcattaccaccggtaaatacatccagaccccgcgcggc
accttcgagctcaagcatttctttgccgtgcgtctggaaggcgccagcgtctccggccag
gcagtcaaggcgatggtgcgcagactgatcgaaagcgaaccggccggccggccgctggcc
gacgaagccatcgccgggctgttgtcgcgtcagggcgttaacattgcccgtcgcactgtg
gccaagtaccgcgaacaactcgacatcgccccggcacgcgagcgccgccgcatcaacaaa
ccgctgcttgcccgggcaggataa
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